KEGG   Shewanella violacea: SVI_2905Help
Entry
SVI_2905          CDS       T01206                                 

Gene name
fadB-2
Definition
(GenBank) fatty oxidation complex, alpha subunit
  KO
K01782  3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
Organism
svo  Shewanella violacea
Pathway
svo00071  Fatty acid degradation
svo00280  Valine, leucine and isoleucine degradation
svo00281  Geraniol degradation
svo00310  Lysine degradation
svo00362  Benzoate degradation
svo00380  Tryptophan metabolism
svo00410  beta-Alanine metabolism
svo00640  Propanoate metabolism
svo00650  Butanoate metabolism
svo00903  Limonene and pinene degradation
svo00930  Caprolactam degradation
svo01040  Biosynthesis of unsaturated fatty acids
svo01100  Metabolic pathways
svo01110  Biosynthesis of secondary metabolites
svo01120  Microbial metabolism in diverse environments
svo01130  Biosynthesis of antibiotics
svo01200  Carbon metabolism
svo01212  Fatty acid metabolism
Module
svo_M00087  beta-Oxidation
Brite
KEGG Orthology (KO) [BR:svo00001]
 Metabolism
  Carbohydrate metabolism
   00640 Propanoate metabolism
    SVI_2905 (fadB-2)
   00650 Butanoate metabolism
    SVI_2905 (fadB-2)
  Lipid metabolism
   00071 Fatty acid degradation
    SVI_2905 (fadB-2)
   01040 Biosynthesis of unsaturated fatty acids
    SVI_2905 (fadB-2)
  Amino acid metabolism
   00280 Valine, leucine and isoleucine degradation
    SVI_2905 (fadB-2)
   00310 Lysine degradation
    SVI_2905 (fadB-2)
   00380 Tryptophan metabolism
    SVI_2905 (fadB-2)
  Metabolism of other amino acids
   00410 beta-Alanine metabolism
    SVI_2905 (fadB-2)
  Metabolism of terpenoids and polyketides
   00903 Limonene and pinene degradation
    SVI_2905 (fadB-2)
   00281 Geraniol degradation
    SVI_2905 (fadB-2)
  Xenobiotics biodegradation and metabolism
   00362 Benzoate degradation
    SVI_2905 (fadB-2)
   00930 Caprolactam degradation
    SVI_2905 (fadB-2)
Enzymes [BR:svo01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.35  3-hydroxyacyl-CoA dehydrogenase
     SVI_2905 (fadB-2)
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.1  Hydro-lyases
    4.2.1.17  enoyl-CoA hydratase
     SVI_2905 (fadB-2)
 5. Isomerases
  5.1  Racemases and epimerases
   5.1.2  Acting on hydroxy acids and derivatives
    5.1.2.3  3-hydroxybutyryl-CoA epimerase
     SVI_2905 (fadB-2)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: 3HCDH_N ECH_1 3HCDH ECH_2
Motif
Other DBs
NCBI-ProteinID: BAJ02876
UniProt: D4ZMH7
Position
complement(3290328..3292454)
Genome map
AA seq 708 aa AA seqDB search
MEKTFNLVRREDGIAVLTIDVPGETMNTLRTEFAAEITEVLAEIKADTSIKGLVLASGKK
DCFVAGADISMLDACTSVEDAKALSQQGHIVFNELEALSIPVVAAIDGVCLGGGLELALA
CHLRVCSQNGKTMMGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKM
GLVDDVVPESILLATAVKMALKGKVAPKKENKSLVNKLLEGTAVGRNIIFDQAGKQVQKK
TQGNYPAPAKIIDCVRQGMAKGKTKGLEVEASHFAELVMSKESAALRSIFFATTEMKKET
GAGDVKPRKVNKAMILGGGLMGGGIASVTTSKAKIPARVKDISEQGLSNALSYAYKLLDK
GVKRRHMTPSARDNIMSLMTTTTEYIGIKYADIVVEAVFEDLSLKHQMVKDVERECGENT
IFASNTSSLPISQIAEAAARPENVIGLHYFSPVEKMPLVEVIAHKKTSPETIATTVAFAR
KQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQSVEHLDKALVKFGFPVGPMTLLDE
VGIDVGAKISPILEAELGERFKAPAAFDKLLSDGRKGRKNGKGFYLYAGKAKKKAKQVDE
SVYQVLGLKPGVNAEVSEVAQRCVVQMLNEAVRCLEEGIIASPRDGDIGAIFGIGFPPFL
GGPFHYIDTLGAGVLVAKLEKYQAKHGDRFTPCNKLIEMAESNQRFFD
NT seq 2127 nt NT seq  +upstreamnt  +downstreamnt
atggaaaagacatttaatttagttcgtcgtgaagatggcatcgctgtactgacgatagat
gtacccggtgaaaccatgaatactctgcgcaccgagtttgctgccgagatcactgaggtt
ttggctgaaattaaagccgataccagtatcaagggactagttttagcttcaggtaagaaa
gattgtttcgttgccggtgcagatatttccatgttagatgcatgtacctcggtagaagat
gccaaggcactgtcacagcaagggcatattgtatttaacgaactcgaagccttatctatc
ccagttgtggcggcgatagatggcgtgtgtctgggcggcggtctggagctggcattggct
tgtcatctaagagtatgtagccaaaacggtaagaccatgatgggcgtgcctgaggttcag
ctaggcctgctacctggcggcggtggaacccaaaggttacctagactcgtgggtatcact
acggcgttagatatgatgctcacgggcaagcagatccgtcctaagcaagcgttgaagatg
ggcttggtcgacgatgttgtccccgagtcgatactgttagctaccgcagttaaaatggcg
ctgaaaggtaaagtagcgcctaagaaggagaataagtctctggttaacaagttactagaa
ggcacagctgttggccgcaatatcatcttcgatcaggcgggtaagcaagttcagaagaag
actcaaggtaattaccctgcacctgccaagattattgactgtgtgcgtcaaggcatggcg
aaggggaaaaccaagggactggaagtggaagccagccatttcgccgagctggttatgtcg
aaagagtcggccgcattaagaagcatcttctttgccacgaccgagatgaagaaagagacc
ggcgccggtgatgttaagcctcgcaaggttaacaaggctatgatactcggtggcggcctt
atgggcggcggtattgcctctgtgacgaccagtaaggctaagatcccggcgcgagtgaaa
gatatcagtgagcaggggcttagcaacgcactttcttatgcttataaactgctggataaa
ggtgtaaagcgtcgtcatatgacgccatcggccagagacaatatcatgtcgctgatgacc
acaaccactgagtatatcggcattaaatatgccgatatcgtggtagaggccgtttttgaa
gacttgagccttaagcatcagatggtaaaagatgtcgaacgcgagtgtggcgagaacacc
atttttgcatcaaatacctcttcactgcctatctcgcagattgctgaggctgctgctcgt
cctgaaaatgttatcggtctgcattacttttctccggttgagaagatgcccttggttgaa
gttatcgctcataagaaaacgtcgccagagaccatagcgactacggtagcctttgctcgc
aagcaaggtaaaacgcctattgttgtacaagatggtgctggcttttatgtgaatcgaatt
ttagcgctttacatgaatgaagctgcacaattgctgcttgaaggtcagagtgttgagcat
cttgacaaggcactggttaagtttggcttcccagttggtcctatgacactactcgatgaa
gttggaatcgatgtcggcgctaagatatcccctatattggaagctgagttaggcgagcga
tttaaggcgcctgctgcgtttgataagttgctgagcgatggcagaaagggtcgtaagaac
ggtaaaggcttctatctgtacgctggcaaggccaagaagaaagctaagcaagtcgacgag
agtgtctaccaagttctcggcttgaaacctggcgtgaacgcagaagtgtctgaagtcgcc
cagcgttgtgtggtgcagatgctcaatgaagctgtgcgttgtttggaagaggggattatc
gcctcaccacgtgatggtgatataggtgctatcttcggcattggtttcccgccattccta
ggtggaccattccattatattgatacgttaggagccggggttttagttgcaaaactagaa
aaataccaagccaagcacggtgacagatttacaccttgtaataagttgatagagatggct
gagagcaatcagcgtttcttcgactaa

DBGET integrated database retrieval system