KEGG   Shewanella woodyi: Swoo_4665
Entry
Swoo_4665         CDS       T00676                                 
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
swd  Shewanella woodyi
Pathway
swd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:swd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Swoo_4665
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:swd03021]
    Swoo_4665
   03400 DNA repair and recombination proteins [BR:swd03400]
    Swoo_4665
Enzymes [BR:swd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Swoo_4665
Transcription machinery [BR:swd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Swoo_4665
DNA repair and recombination proteins [BR:swd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Swoo_4665
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L RNA_pol_L_2
Other DBs
NCBI-ProteinID: ACA88915
UniProt: B1KM35
Position
complement(5643319..5644308)
AA seq 329 aa
MQGSVTEFLRPRLVDIEQVNPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDVLEILLNLKGLAVVVEGKDEAMLTLSKSGAGPVTAADITHDGD
VTIMNPDHVICHLTGNNDVSMRIRVERGRGYVPASARAQTEDDERPIGRLLVDSSFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEPE
LKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLADDL
NT seq 990 nt   +upstreamnt  +downstreamnt
atgcagggttctgttacagaatttcttagaccgcgtctcgttgatatcgagcaggttaat
ccaacacgtgccaaagttacacttgagccgctagaacgtggtttcggtcacactttaggt
aacgcgttgcgtcgtatcctattgtcgtcaatgccaggctgcgcggtaaccgaagtagag
atcgatggtgtactgcatgaatacagtagcaaggaaggcgttcaagaggatgttcttgag
atcctactaaaccttaaaggtttagcagtagtggtcgaaggaaaagacgaagctatgctt
acgttaagtaagtcaggcgcaggccctgttactgcagcagatatcacgcatgatggtgat
gttaccatcatgaatcctgaccatgttatctgtcatttgacaggtaataatgatgtcagc
atgcgtatccgtgtagagcgtggtcgtggttatgtaccggcatcagcccgtgcacaaact
gaagacgacgaacgccctatcggccgcttgttggtggattcttcattctcgccagtagca
cgtatagcctacaatgtagaagctgcacgtgttgaacagcgtactgacttagataaactc
gttattgatatgaccacaaacggtactatcgatcctgaggaagctatccgtcgcagtgca
accattttagctgaacagctagatgcgtttgttgagcttcgtgatgttactgagccagag
ttgaaagaagagaagccggagttcgatccgattttgctacgtcctgtcgacgatttagag
ctaactgtacgttcagctaactgtttgaaggctgaagcgattcattatatcggtgatctg
gtacaacgtactgaagttgagttgcttaagactcctaacctaggtaagaagtctcttact
gaaattaaggatgttttagcgtctcgcggactgtcgttaggtatgcgtcttgaaaactgg
cctccagctagtttagcagacgacctttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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