KEGG   Rhizorhabdus wittichii RW1: Swit_3467
Entry
Swit_3467         CDS       T00538                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
swi  Rhizorhabdus wittichii RW1
Pathway
swi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:swi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Swit_3467
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:swi03021]
    Swit_3467
   03400 DNA repair and recombination proteins [BR:swi03400]
    Swit_3467
Enzymes [BR:swi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Swit_3467
Transcription machinery [BR:swi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Swit_3467
DNA repair and recombination proteins [BR:swi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Swit_3467
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Peptidase_M23 AAA_27
Other DBs
NCBI-ProteinID: ABQ69813
UniProt: A5VBZ7
Position
complement(3805208..3809479)
AA seq 1423 aa
MNELTNFANPVAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVIEPGLTPLEKYQLLNEDELLEAQDEYGEDAFSAG
IGAEAVRRMLEELDLEGEKEDLLKELAETKSELKPKKIIKRLKVVESFLESGNRPEWMIL
EVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QESVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMLKEGEPGEGSLIADMQEVHQALAA
KAVTLHTKIISRVPQTDEDGNQYMKRVETTPGRMLLGETLPKSHKVPFETVNRLLTKKEI
GDVIDIVYRHTGQKETVLFADAIMALGFRHAFQAGISFGKDDMIIPEAKEKEVEETRLLV
KDFEQQYQDGLITQQEKYNKVIDAWSRCGDRVAAEMMKEISAVKKGADGREKPINAIYMM
AHSGARGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVVEVDCGTDRALDMKAIVQGGATIASLGERILGRTAA
EDIVDSKTNEVLIAEGTLLDEAMVAAVEAIGIQSVKIRSPLVCESKGGVCAACYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLESVADGSIEYRELRTI
TDPRGRRVSLSRSGEVAIIDSEGRERATHRLPYGAHLLLDDGAAVAKGDRIAEWDPFTMP
VITETGGIVKYQDLIDNQTLTEQTDEATGISQKVVIEYRATSRKEDLRPRLTLLDDSSGE
TARYMLAPGAMLSVEDGQEVKAGEVLARVSRESAKTRDITGGLPRVAELFEARKPKENAI
IAKVSGRVEFGKDYKAKRKIIIRPDDGSDAVEYLVPKSKVIDVQEGDYVKRGDNLIGGSP
DPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLQKVEITDGGDTTLL
PGEQVDREEMDEINAKADAEGRTIAQGKPVLLGITKASLQTRSFISAASFQETTRVLTDA
SVQGKVDTLNGLKENVIVGRLIPAGTGAGMSRLRVTASSRDAALRAAQRNWQESLIAPQT
AAEEHAAELRQPVQADTGDDPLGAVVGESHGTDADAGDYLTEE
NT seq 4272 nt   +upstreamnt  +downstreamnt
atgaacgaactgaccaatttcgccaatccggtcgcgaagcccgagaccttcgaccagatc
cagatcggcatcgccagcccggagcgcatccgcagctggtccttcggtgagatcaagaag
ccggagacgatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgagaagtgcggcgtcgaggtcaccgtctcgaaggtccgccgcgag
cggatgggccatatcgagctggccgccccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgggtgctctac
ttcgagagctacatcgtcatcgagccgggcctgaccccgctggagaagtatcagctcctc
aacgaggacgagctgctcgaggcgcaggacgaatatggcgaggacgccttctcggccggg
atcggcgccgaggcggtccgccgcatgctggaggagctcgacctcgaaggcgagaaggag
gacctcctcaaggagctcgccgagaccaagtccgagctcaagcccaagaagatcatcaag
cggctcaaggtcgtcgagagcttcctggagtcgggcaaccgccccgagtggatgatcctc
gaggtgatcccggtcatcccgccggatctccgcccgctcgtgccgctcgacggcggccgc
ttcgcgacgtcggacctcaacgacctctatcgtcgcgtcatcaaccgcaacaaccgcctc
aagcggctgatggagctgcgcgcgccggacatcatcgtccgcaacgagaagcgcatgctg
caggagtcggtcgacgcgctgttcgacaacggccgccgcggccggacgatcacgggcgcc
aacaagcgcccgctgaagtcgctcagcgacatgctgaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgctcggtgatcgtcaccggtccg
gagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccggctcgacgccaagggcctgtcgatgacgctcaagcaggccaagaag
tgggtcgagaaggagcgcaaggaggtctgggacatcctcgacgaggtgatccgcgagcat
ccggtgctgctcaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagctccacccgctggtctgctcagccttcaacgcc
gacttcgacggtgaccagatggcggtccacgtgccgctgtcgctggaggcgcagctcgaa
gcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgcgaacggcaagccgatc
atcgtcccgtcgcaggacatggtgctgggcctctattatctgtcgatgctgaaggaaggc
gagccgggcgagggatcgctgatcgcggacatgcaggaggtccaccaggcgctggccgcc
aaggcggtgacgctgcacaccaagatcatcagccgcgttccgcagaccgacgaggacggc
aaccagtacatgaagcgcgtcgagacgacgccgggccgcatgctgctcggcgagacgctg
ccgaagagccacaaggttccgttcgagacggtcaaccgcctgctgaccaagaaggagatc
ggcgacgtcatcgacatcgtctatcgccacaccggccagaaggagacggtgctgttcgcc
gacgcgatcatggcgctgggcttccgccacgccttccaggccggcatctcgttcggcaag
gacgacatgatcatccccgaagccaaggagaaggaggtcgaggagacccgtctgctggtg
aaggacttcgagcagcagtatcaggacggcctgatcacgcagcaggagaagtacaacaag
gtgatcgacgcctggtcgcgttgcggcgaccgcgtggcggccgagatgatgaaggagatc
tcggcggtcaagaagggcgccgacggccgcgagaagccgatcaacgcgatctacatgatg
gcgcactccggtgcccgcggtagcgccgcgcagatcaagcagctcgccggcatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcgaacttcaaggaa
ggcctgaccgtcctcgagtacttcaactcgacccacggcgcccgcaagggtctcgccgac
accgcgctcaagacggcgaactcgggctacctgacccgccgtctggtcgacgtgtcgcag
gactgcgtcgtcgtcgaggtcgattgcggcaccgaccgcgcgctcgacatgaaggcgatc
gtccagggcggcgccaccatcgcgtcgctcggcgagcgcatcctgggccgcaccgcggcc
gaggacatcgtcgattcgaagaccaacgaggtcctgatcgccgagggcacgctgctcgac
gaggcgatggtcgcggcggtcgaggcgatcggcatccagtcggtcaagatccgcagcccg
ctggtctgcgaatcgaagggcggcgtctgcgcggcctgctacggccgtgacctcgcccgc
ggcacgccggtgaacatcggcgaagcggtcggcgtcatcgcggcgcagtcgatcggcgag
ccgggcacccagctgacgatgcggaccttccacatcggcggcgcggcgcagctcaacgag
cagtcgaacctcgaatcggtcgccgacggcagcatcgagtatcgcgagctccgcacgatc
accgatccgcgcggacgccgcgtctcgctgagccgcagcggcgaggtggcgatcatcgac
agcgagggccgcgagcgcgcgacccatcgcctgccctatggcgcgcacctgctgctcgac
gacggcgcagccgtcgccaagggcgatcgcatcgccgaatgggaccccttcaccatgccg
gtgatcaccgagaccggcggcatcgtgaagtatcaggacctgatcgacaaccagacgctc
accgagcagaccgacgaagccaccggcatcagccagaaggtcgtcatcgagtaccgcgcc
accagccggaaggaagacctccgtccgcgcctgacgctgctcgacgacagctcgggcgag
accgcgcgctacatgctggcgccgggcgcgatgctctcggtcgaggacggccaggaggtg
aaggccggcgaggtgctcgcccgcgtcagccgcgagtcggccaagacccgcgacatcacc
ggcggtctgccgcgcgtcgccgagctgttcgaggcgcgcaagcccaaggaaaacgcgatc
atcgcgaaggtttcgggccgcgtcgagttcggcaaggactacaaggccaagcgcaagatc
atcatccgcccggacgatggttcggatgcggtcgaatatctggtgccgaagtcgaaggtc
atcgacgtgcaggaaggcgactatgtcaagcgcggcgacaacctgatcggcggctcgccc
gatccgcacgacatcctcgaggtgctcggcatcgagccgctcgccgaatatctcgtgtcg
gagatccaggaggtctatcgcctccagggcgtgaagatcaacgacaagcacatcgagacg
atcgttcgtcagatgctgcagaaggtcgagatcaccgacggcggcgacaccaccctgctc
cccggcgagcaggtggaccgcgaggagatggacgagatcaacgccaaggcggatgccgag
ggccgtacgatcgcgcagggcaagcccgtgctgctcggcatcaccaaggcctcgctccag
acgcgctcgttcatctcggccgcgtcgttccaggagacgacccgcgtcctcaccgacgcg
tcggtgcagggcaaggtcgacacgctgaacggcctcaaggagaacgtcatcgtcggccgc
ctgatcccggcgggcaccggcgccggcatgagccgcctgcgcgtcaccgccagcagccgc
gacgccgcgctccgcgccgcgcagcgcaactggcaggagtcgctgatcgcgccgcagacc
gccgccgaggagcatgccgccgagctgcgccagccggtccaggccgacaccggcgacgat
ccgctcggcgcggtggtcggcgaatcgcacggcaccgacgccgatgcgggcgattacctg
accgaggagtga

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