KEGG   Rhizorhabdus wittichii RW1: Swit_4677
Entry
Swit_4677         CDS       T00538                                 
Name
(GenBank) Excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
swi  Rhizorhabdus wittichii RW1
Pathway
swi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:swi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Swit_4677
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:swi03400]
    Swit_4677
DNA repair and recombination proteins [BR:swi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Swit_4677
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Swit_4677
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 UB2H DUF87 AAA_16 AAA_22 AAA_33 SWI2_SNF2 SRP54 Microtub_bd Kinesin TrwB_AAD_bind
Other DBs
NCBI-ProteinID: ABQ71014
UniProt: A0A9J9LFX6
Position
5144664..5147111
AA seq 815 aa
MFPLAGGEGVGEGRSRAGQQQEGEDGRCPADDAGAPAKPIDHLRHFSLSRAILNAWRPGF
KRQPAGRARFRSKIKGEHPPSLSYIGRAMTIQIRTSLDDVDLGQSFVPHRPERPEKTEGG
KPFKLVSDYEPSGDQPTAIAELAAQAAAGERDQVLLGVTGSGKTFTMAKVVEQLQRPALV
LAPNKILAAQLYGEFKQFFPENAVEFFVSYYDYYQPEAYVPRSDTYIEKESSVNEAIDRM
RHSATRSLLERDDVLIVASVSCLYGIGSVETYSAMIFDLKKGQTVDQREIIRKLVALQYK
RNDAAFSRGNFRVRGDNLEIFPSHYEDSAWRIAFFGDEIEEIVEFDPLTGKKAASLDHVR
VFANSHYVTPGPTMKQAMEAIRFELTERLKELHAEGRLLEAQRLEQRTNFDLEMIAATGS
CAGIENYSRFLTGRLPGEPPPTLFEYLPENALLFVDESHQTIGQINGMSRGDHRRKITLA
EYGFRLPSCIDNRPLRFSEWEVMRPQTVYVSATPGGWEMEQTGGVFTEQVIRPTGLIDPP
VDIRPIESQVDDLVHEARETAKQGYRTLVTTLTKRMAEDLTEYLHEAGLKVRYMHSDVET
LERIELIRDLRLGVYDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRA
ARNVDGRVILYADSITGSMERAMAETSRRREKQQAYNEEHGITPETIRRSITDIVGHLAS
KDQVTVDTGIEDRPHMVGHNLRAYIEELEGKMRAAAADLEFEEAGRLRDEIRKLEQEELG
LPVEQHHAPAKSHSISGKPGTRTTKYGKMRAARGK
NT seq 2448 nt   +upstreamnt  +downstreamnt
atgttcccactggccggcggagaaggtgtcggcgagggccggagccgcgccggtcagcag
caggagggcgaggatggccggtgtccggccgatgatgctggcgcccctgcgaaaccgatc
gatcatttgcggcatttctccctgtcgcgggcgatccttaacgcctggcgaccagggttc
aagcgccagcccgccgggcgcgcgcgatttcggtcgaagataaaaggtgaacatccgccc
tccctgtcctacataggcagggccatgacgatccagatccgcaccagcctcgacgatgtc
gacctcggccagtccttcgttccgcaccggcccgagcggccggagaagaccgaaggcggc
aagccgttcaagctggtgtccgactatgaaccctcgggcgaccagccgaccgcgatcgcc
gagctggcggcgcaggccgcggcgggcgagcgcgaccaggtgctgctgggcgtcaccgga
tcgggcaagaccttcaccatggccaaggtggtcgagcagctccagcgcccggcgctggtg
ctggcgccgaacaagatcctcgcggcgcagctctatggcgagttcaagcagttcttcccg
gagaacgcggtcgaattcttcgtcagctattacgactattaccagcccgaggcctatgtg
ccccggtcggacacctatatcgagaaggaaagctcggtgaacgaggcgatcgaccggatg
cgccattcggccacccggtcgctgctcgaacgcgatgacgtgctgatcgtcgcgtcggtc
tcctgcctctacggcatcggctcggtcgagacctattcggcgatgatcttcgacctgaag
aagggccagaccgtcgaccagcgcgagatcatccgcaagctcgtcgcgctccagtacaag
cgcaacgacgccgccttctcgcgcggcaatttccgggtgcgcggcgacaatctggagata
ttcccgtcgcattatgaggacagcgcctggcggatcgccttcttcggcgacgagatcgag
gagatcgtcgagttcgacccgctgaccggcaagaaggcggccagcctcgaccatgtccgc
gtcttcgccaattcgcactatgtgacccccgggccgacgatgaagcaggcgatggaggcg
atccgcttcgaactgaccgagcggctcaaggagctgcacgccgagggccggctgctggag
gcgcagcggctggagcagcgcaccaatttcgacctggagatgatcgccgcgaccggaagc
tgcgccggcatcgagaattattcgcgcttcctgaccgggcgcctgccgggcgagccgccg
cccaccctgttcgaatatctgcccgagaacgcgctgctgttcgtcgacgagagccaccag
acgatcggccagatcaacggcatgtcgcgcggcgaccaccggcgcaagatcacgctggcc
gaatatggcttccgcctgccgtcgtgcatcgacaaccgcccgctgcgcttcagcgagtgg
gaggtgatgcggccgcagaccgtctatgtctcggcgacgccgggcgggtgggagatggag
cagaccggcggcgtcttcaccgagcaggtgatccgcccgaccgggctgatcgatccgccg
gtcgacatacggccgatcgaaagccaggtcgacgacctggtccacgaggcgcgcgagacg
gcgaagcagggctatcgcaccctcgtcaccacgctgaccaagcggatggcggaggacctg
accgaatatctgcacgaggcggggctcaaggtccgctacatgcattcggacgtcgagacg
ctggagcgcatcgagctgatccgcgacctgcggctcggcgtctacgacgtgctggtcggc
atcaacctgctgcgcgaggggctcgacatccccgaatgcgggctggtcgcgatcctcgac
gccgacaaggagggcttcctccggtcggagacatcgctgatccagacgatcggccgcgcc
gcgcgcaacgtcgacgggcgggtgatcctctatgccgacagcatcaccggatcgatggag
cgcgcgatggccgagacctcgcgccgccgcgagaagcagcaggcctataatgaggagcac
ggcatcacgcccgagacgatccggcgctcgatcaccgatatcgtcggccatctcgcctcg
aaggaccaggtcacggtcgacaccgggatcgaggaccggccgcacatggtcggccacaat
ctgcgcgcctatatcgaggaactggagggcaagatgcgggcggcggcggccgatctcgag
ttcgaggaggcgggccgcctgcgcgacgagatccgcaagctcgagcaggaggaactgggc
ctgccggtcgagcagcatcacgccccggccaagagtcacagtatcagcggcaagcccggc
acccgcaccaccaaatatggcaagatgcgcgcggcccgtggcaaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (17)   
   Pfam (17)   
All databases (34)   

Download RDF
DBGET integrated database retrieval system