KEGG   Shewanella piezotolerans: swp_4694
Entry
swp_4694          CDS       T00791                                 
Name
(GenBank) DNA helicase II
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
swp  Shewanella piezotolerans
Pathway
swp03420  Nucleotide excision repair
swp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:swp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    swp_4694
   03430 Mismatch repair
    swp_4694
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:swp03400]
    swp_4694
Enzymes [BR:swp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     swp_4694
DNA repair and recombination proteins [BR:swp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     swp_4694
   MMR (mismatch excision repair)
    Other MMR factors
     swp_4694
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PcrA_UvrD_tudor UvrD_C_2 AAA_30 ADDB_N ResIII
Other DBs
NCBI-ProteinID: ACJ31330
UniProt: B8CTT6
Position
complement(4924240..4926405)
AA seq 721 aa
MDVSSLLDGLNDKQREAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILAV
TFTNKAAKEMRERVEKVAGGNMSRMWIGTFHGLAHRLLRTHYKEANLPQSFQILDSDDQL
RLIKRILKSLNLDEKQYPPRHAQGYINGKKDLGLRPSHIDAGGFPIEQNLLKIYQVYQDS
CDRAGLVDFAEILLRAHELWLNKPHILDHYQDRFKHILVDEFQDTNAIQYAWIRVLAGSS
ANVMIVGDDDQSIYGWRGAQVENLHKFLGDFPTAQTIRLEQNYRSSANILNASNELIANN
PDRMGKKLWTDDKDGEPIGLYCAFNEMDEARFIVGRINDWQDEGGKLADCAILYRSNAQS
RVLEEALLHKGIAYRIYGGLRFFERQEIKDAMGYLRLISNKNDDAAFERVVNTPARGIGG
RTLEIMRTTARQQELTLWDACVRLLEEKVLSGRAANAVRGFMDLIVALRVDTEEQSLHRR
TDHVIQASGLKLMYETEKGEKARARVENLEELVTAARSFVVPEELEDMGELDAFLSHAAL
EAGEGQADEFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPSQMAIDEGDRLDEERRLCY
VGMTRAMQQLYITYAESRRIYGRESFARPSRFVKEIPEQFVQEIRMRTQVSAPAVSTRFS
KQDSSFNESGFKIGQKVSHPKFGEGTVTNYEGSGPQARIQVNFYDVGSKWLVIAYARLEK
L
NT seq 2166 nt   +upstreamnt  +downstreamnt
atggacgtatcttctttactagacggcctaaatgacaagcagcgtgaagccgtaggcgcg
ccgcaatctagcatgttagtgttggctggagcgggtagtggtaaaactcgagtgttaaca
caccgaatcgcttggctaatgcaggtcgaacagcaaagtccttacgctattttagcggta
acgtttaccaataaagcagctaaagagatgcgtgagcgcgtcgaaaaagtcgctggtggt
aatatgagccgcatgtggattggtaccttccacggtttagctcaccgattactgcgcacc
cattataaagaggccaacctgccgcaaagcttccaaattttagattccgatgatcaacta
cgactgatcaaacgcattctaaaaagcctaaatttggatgagaaacagtatccaccaagg
catgctcaaggctatatcaatggtaaaaaagatcttggtcttcgtccatcgcatatcgat
gcgggcggctttcctattgagcaaaacttactgaaaatctatcaggtttaccaggattct
tgtgaccgcgcaggtctggtcgattttgctgaaatattactgcgcgctcatgagctgtgg
ctcaataaaccgcatattctcgatcactaccaagacagatttaaacatattttggtcgac
gagtttcaagacaccaacgccattcaatatgcttggatccgtgtgctcgcgggctcgagc
gctaacgtgatgatagtgggtgatgatgaccaatcaatttatggctggcgtggcgctcaa
gttgaaaacctgcataagttcttaggggattttcctacagctcagactattcgcttagag
cagaactaccgctctagcgccaatattcttaacgcctctaacgaactgatcgctaacaac
cctgatcgcatgggtaaaaagctttggaccgatgacaaagatggtgagccgatagggctt
tattgtgcctttaatgaaatggatgaagcgcgctttattgtggggcggattaacgattgg
caggatgaaggtggcaagttagcagattgcgccattttatatcgctcaaatgcgcaatca
cgcgtgttagaagaagccttgctgcacaagggaatcgcttaccgcatctatggcggtcta
cgattcttcgagcgccaagagattaaagacgccatgggttacctgaggctcattagcaat
aaaaatgatgatgccgcctttgagcgtgtcgtgaatacacctgcgcgcggtattggcggt
agaaccttagagataatgcgtactacagcacgtcagcaagagcttaccctgtgggatgct
tgtgtgcgtttgctagaggaaaaagtacttagcggccgtgcagccaatgccgttcgtggt
tttatggacttaatcgtcgcgctaagagtagacactgaagagcaatcgttacacagacgc
accgaccatgtgatccaagcgtctggccttaaactgatgtatgaaactgaaaagggcgaa
aaggccagggcacgcgttgaaaacttggaggagctggtcactgcagcgcgcagctttgtt
gtgcctgaagagcttgaagatatgggcgagcttgacgctttcctatctcacgcagcatta
gaggctggtgaaggccaagccgacgagtttaccgatgcggtgcagttgatgacattgcac
tcagccaaaggtcttgaattccctatggtattcatggcgggcgttgaagagggtttgttc
cccagccagatggcaatcgatgaaggtgaccgcctcgatgaagagcgacgtctttgttat
gtggggatgacccgagcgatgcaacagctctatataacctatgccgagtctcgccgcata
tatggccgagagagctttgctagaccgtcacgttttgtgaaagagatccctgagcaattt
gtacaagagatccgcatgcgtacccaagtgtcagcgccggcagtaagtacacgttttagc
aaacaggacagctcttttaacgagtctggtttcaaaataggccaaaaagtgagtcatccc
aaatttggtgaaggtactgttaccaattacgaaggcagtggcccacaggcgcgaattcag
gtcaatttttatgatgttggcagtaagtggttagtgattgcttatgctcggctagagaag
ctataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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