KEGG   Staphylococcus xylosus C2a: SXYL_02378
Entry
SXYL_02378        CDS       T03742                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
sxo  Staphylococcus xylosus C2a
Pathway
sxo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sxo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SXYL_02378 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sxo03021]
    SXYL_02378 (rpoB)
   03400 DNA repair and recombination proteins [BR:sxo03400]
    SXYL_02378 (rpoB)
Enzymes [BR:sxo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SXYL_02378 (rpoB)
Transcription machinery [BR:sxo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SXYL_02378 (rpoB)
DNA repair and recombination proteins [BR:sxo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SXYL_02378 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 ATP-grasp_6
Other DBs
NCBI-ProteinID: CEF19758
Position
Chr1:complement(2421088..2424639)
AA seq 1183 aa
MAGQFVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFLEEGLLEMFRDISPIEDFTG
NLSLEFVDYRLGEPKYDLEESKNRDTTYSAPLRVKVRLIIKETGEVKEQEVFMGDFPLMT
DTGTFVINGAERVIVSQLVRSPSVYFNEKLDKNGRTNFDATIIPNRGAWLEYETDAKDVV
YVRIDRTRKLPLTVLLRALGFSTDQEIVDLLGDNEYLRNTLEKDGTENTDQALLEIYERL
RPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKANKKLHLKHRLFNQKLAEPIVNSETG
EIVAEEGTVLDRRNLDEIMDVLESNANSEVFELEGTVIDEPVEIQSIKVYVPNDEEGRTT
TVIGNAFPDSEVKCITPADIISSMSYFFNLLSGIGFTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDTDSVTPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELT
YKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFG
FIETPYRKVDLETNSITEQIDYLTADEEDSYVVAQANSKLDENGRFLDDEVVCRFRGNNT
VMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPESPFVGTG
MEHVAARDSGAAIVAKRKGRVEHVESNEVLVRQLIEEDGQEYEGELDRYPLAKFKRSNTG
TCYNQRPIVSPGDVVTRGEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERL
VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSDSALKNLDDRGIVYVGAEVNDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDT
LSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKLVPEEDMPYLPDGTPIDIMLNPL
GVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGASDEDVWSTIEEAGMARDGKTVLYDG
RTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTYKSDDTVGRVKTYESIVKGENITKPGVPESFRVLMKELQSLGL
DVKIMDEHDNEIDMQDNEDDDVVERKVDLQQKDAPQSQKEVTD
NT seq 3552 nt   +upstreamnt  +downstreamnt
ttggcaggtcaatttgtccaatatggaagacatcgtaaacgtagaaactatgcgagaatt
tcagaggtattagaattaccgaatttaattgagattcaaactaagtcttacgattggttc
ttagaagaaggtttattagaaatgtttagagacatttcaccgattgaagatttcacaggc
aatctatctttagagtttgtagattatagactcggagaaccgaaatatgatttagaagaa
tcaaaaaaccgtgatacaacgtattctgcacctctacgtgttaaagtgcgtttaattatc
aaagaaactggcgaagtaaaagaacaagaagtgtttatgggcgatttcccattaatgaca
gatacaggtacattcgtaattaacggtgctgaacgtgttatcgtatcacaattagttcgt
tcaccatccgtatacttcaatgaaaaactagataaaaacggccgtacaaacttcgacgca
acaattattccaaaccgtggtgcatggttagaatatgaaactgatgctaaagatgttgta
tatgtacgtattgatagaactagaaagttaccattaacagtattattacgtgctttaggt
ttctcaactgatcaagaaattgttgatcttttaggtgataatgagtatttacgtaatact
ttagaaaaagatggtacagaaaacacagatcaagcgctattagaaatctatgagcgtttg
cgccctggtgaaccacctacagttgaaaatgctaagagtcttttatactcacgtttcttc
gatccgaaacgttatgacttagcaagtgtaggtcgttataaagcaaacaaaaaacttcat
ttaaaacatcgcttatttaatcaaaaattagctgaaccaattgttaattctgaaacaggt
gaaattgtagctgaagaaggtacggtacttgatcgtcgtaatttagatgaaatcatggac
gtattagaatcaaatgctaacagtgaagtctttgaattagaaggtacagtaattgatgaa
cctgttgagattcaatcaattaaagtttatgttcctaatgatgaagaaggacgtacaaca
acagtgattggtaatgcattccctgattcagaagtgaaatgtattactccagcagacatt
atttcatcaatgtcatacttctttaacttattaagtggtattggtttcacggatgatatt
gaccaccttggtaaccgtcgtctacgttcagtaggtgaattgttacaaaaccaattccgt
attggtttatcaagaatggagcgtgtggtacgtgaaagaatgtctattcaagacacagat
tctgtaactccacaacaattaatcaacattcgtcctgttattgcatctattaaagagttc
tttggtagttcacaattatcacaattcatggaccaagctaatccgttagcagagttgacg
tacaaacgtcgtttatctgctctaggacctggtggtttaacacgtgaacgtgctcaaatg
gaagtacgtgacgttcactattctcactatggccgtatgtgtccaatcgaaacgcctgag
ggtccaaacattggacttatcaactcattgtctagttatgcacgtgtgaatgaatttggt
ttcattgaaacaccttatcgtaaagtagaccttgaaacaaatagcattactgagcaaatc
gattacttaacagctgatgaagaggatagttatgtggtagcacaagccaactctaaatta
gatgaaaatggtcgtttcttagatgatgaagttgtttgtcgtttccgtggtaataacaca
gttatggctaaagaaaaaatggactacatggatgtttcaccaaaacaagtcgtttctgct
gcaacagcatgtattcctttcttagaaaatgatgactctaaccgtgcattgatgggtgca
aacatgcaacgtcaagcagtgccattgatgaaccctgaatcaccatttgttggtacgggt
atggagcacgtggcagcacgtgactcaggtgcggcaattgttgcaaaacgtaaaggccgt
gttgagcacgttgaatctaatgaagttcttgttcgtcaacttattgaggaagatggtcaa
gaatacgaaggcgaattagatcgctatccattagcgaagttcaaacgttcaaacactggt
acatgttataaccaaagacctatcgtttctcctggtgacgtagtgacaagaggcgaaatt
ttagctgatggtccttctatggaacttggtgaaatggcgttaggtagaaacgtagttgtt
ggtttcatgacttgggacggttacaactatgaggatgccgtaatcatgagtgaacgccta
gttaaagatgacgtatatacttctattcatattgaagagtatgaatcagaagcacgtgat
actaaactaggacctgaagaaatcacacgtgatattccaaacgtttcagatagtgcgctt
aaaaacttagatgaccgtggtattgtatacgtcggcgctgaggttaatgatggagatatc
ttagtaggtaaagtaacgcctaaaggtgtaacagaattaactgcagaagaacgtttatta
cacgcaatctttggtgaaaaagcacgtgaagttcgcgatacatcattacgcgtacctcat
ggtgcaggtggtattgttctagatgttaaagtctttaaccgtgaagaaggagatgatacg
ttatctccaggtgttaaccaattagttcgtgtttatatcgttcaaaaacgtaaaattcac
gtaggagataagatgtgtggtcgtcatggtaacaagggtgtaatttcaaaacttgttcct
gaagaagacatgccgtatctaccagacggtacaccgattgatatcatgttaaaccctcta
ggtgtaccatcacgtatgaatatcggacaagtattagagctacacttaggtatggctgct
aaaaacttaggtatccatgttgcatcaccagtatttgatggtgcgagtgatgaagacgta
tggtcaacaatcgaagaagctggtatggctcgtgacggtaaaaccgtattatacgatggt
cgtacaggtgaaccattcgataacagaatttcagtcggcgtaatgtacatgttgaaacta
gcacacatggttgacgataaattacatgcgcgttcaactggaccatactcattagtaacg
caacaaccgcttggtggtaaagcacaattcggtggacaacgtttcggtgagatggaagta
tgggcacttgaagcatacggtgctgcatatacacttcaagaaattttaacttataaatca
gatgacacagtaggtcgtgttaagacatatgaatctattgttaaaggtgaaaacatcact
aaacctggtgttccagaatcattccgagtattgatgaaagaattacaaagtttaggccta
gacgttaaaatcatggacgagcatgacaatgaaattgacatgcaagacaatgaagatgat
gatgtcgttgagcgtaaagtggatcttcaacaaaaagatgcaccgcaatcacaaaaagaa
gttacagactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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