KEGG   Sphingobium yanoikuyae: A6768_02470
Entry
A6768_02470       CDS       T05170                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
sya  Sphingobium yanoikuyae
Pathway
sya00010  Glycolysis / Gluconeogenesis
sya00020  Citrate cycle (TCA cycle)
sya00260  Glycine, serine and threonine metabolism
sya00280  Valine, leucine and isoleucine degradation
sya00310  Lysine degradation
sya00380  Tryptophan metabolism
sya00620  Pyruvate metabolism
sya00630  Glyoxylate and dicarboxylate metabolism
sya00640  Propanoate metabolism
sya00785  Lipoic acid metabolism
sya01100  Metabolic pathways
sya01110  Biosynthesis of secondary metabolites
sya01120  Microbial metabolism in diverse environments
sya01200  Carbon metabolism
sya01210  2-Oxocarboxylic acid metabolism
sya01240  Biosynthesis of cofactors
Module
sya_M00009  Citrate cycle (TCA cycle, Krebs cycle)
sya_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sya_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
sya_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:sya00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    A6768_02470 (lpdA)
   00020 Citrate cycle (TCA cycle)
    A6768_02470 (lpdA)
   00620 Pyruvate metabolism
    A6768_02470 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    A6768_02470 (lpdA)
   00640 Propanoate metabolism
    A6768_02470 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    A6768_02470 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    A6768_02470 (lpdA)
   00310 Lysine degradation
    A6768_02470 (lpdA)
   00380 Tryptophan metabolism
    A6768_02470 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    A6768_02470 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sya04147]
    A6768_02470 (lpdA)
Enzymes [BR:sya01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     A6768_02470 (lpdA)
Exosome [BR:sya04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   A6768_02470 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox FAD_oxidored FAD_binding_2 GIDA Pyr_redox_3 NAD_binding_8 AlaDh_PNT_C HI0933_like Thi4 FAD_binding_3 Lys_Orn_oxgnase 3HCDH_N DAO
Other DBs
NCBI-ProteinID: ATI78979
UniProt: A0A084EQA5
Position
529633..531033
AA seq 466 aa
MSDFDYDVLVIGAGPGGYVAAIRAAQLGLKTACAESRETLGGTCLNVGCIPSKALLHASE
LYDEAANGALAKLGVKIDKMSLDLPTMQGQRVDAIKGLTGGIEYLFKKNKVTWLKGLASF
TGANTVEVNGEKVTAKNIVIATGSSVAPLPGVAVDNAGGKIVDSTGALELDKVPGHLVVV
GGGVIGLELGSVWKRLGAKVTVVEYLDQILPGMDGEVRKEANKIFKKQGFEYKLGTKVTG
AEVGKSGVTLTVEPAAGGEAEKIEADVVLVSIGRRPNTEGLGLDKIGLELNARGQIETDH
EFGTKVPGVWAIGDVIPGPMLAHKAEDEGIAVAENIAGLTGIVNHDVIPSVVYTKPEIAG
VGLTEEAAKERGAVKVGKFPMMANSRAKTNHEPDGFVKIIADAETDKVLGVWIIATVAGT
MIAQAAQAMEFGASSEDIAYTCHAHPTHSEAIKEAAMAVTGKPIHM
NT seq 1401 nt   +upstreamnt  +downstreamnt
atgtccgatttcgattatgacgtcctggttatcggtgctggcccgggtggctatgtcgcc
gcgatccgcgctgcgcagctgggcctgaagaccgcctgcgctgaaagccgcgagacgctt
ggcggcacctgcctcaatgtcggctgcatcccgtcgaaggcgctgctgcacgcctcggaa
ctttatgacgaggccgccaatggcgcgctcgccaagctgggcgtcaagatcgacaagatg
agcctggacctgcccaccatgcagggccagcgcgtcgatgccatcaagggcctgaccggc
ggcatcgaatatctgttcaagaagaacaaggtgacctggctcaagggcctggccagcttc
accggcgccaacaccgtcgaagtgaatggcgagaaggtgacggcgaagaacatcgtcatc
gccaccggttcgtcggtcgccccgctgcccggcgtggccgtggacaatgcaggcggcaag
atcgtcgattcgaccggcgcgctggaactggacaaggttccgggccatctggtcgtcgtc
ggtggcggcgtcatcggcctggaactgggttcggtgtggaagcgcctgggcgccaaggtg
accgtggtcgaatatctcgaccagatcctgcccggcatggacggcgaagtccgcaaggaa
gccaacaagatcttcaagaagcagggcttcgaatataagctcggcaccaaggtgaccggc
gccgaagtcggcaagtcgggcgtgaccctgaccgtcgaacccgccgccggtggcgaagcc
gaaaagatcgaggctgacgttgtcctggtgtcgatcggtcgtcgtcccaacaccgagggc
ctgggcctcgacaagattggcctggagctgaacgcgcgcggtcagatcgagaccgatcat
gagttcggcaccaaggttccgggcgtctgggcgatcggcgacgtcatccccggcccgatg
ctggcgcacaaggccgaggacgaaggcattgccgtcgccgagaatattgccggcctgacc
ggcatcgtgaaccatgacgtgatcccctcggtggtctacaccaagccggaaatcgcgggc
gtgggcctgaccgaggaagccgccaaggaacgtggcgccgtcaaggtcggcaagttcccg
atgatggcgaacagccgtgcgaagaccaatcacgagcccgacggcttcgtgaagatcatc
gccgacgccgaaaccgacaaggtgctgggcgtgtggatcatcgccaccgtcgccggcacg
atgatcgcacaggccgcgcaggccatggaattcggcgcgtcgagcgaagacatcgcctat
acctgccatgcgcatccgacgcacagcgaagcgatcaaggaagcggcgatggccgtgacc
ggcaagccgatccacatgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (23)   
   KEGG PATHWAY (16)   
   KEGG MODULE (7)   
Chemical substance (27)   
   KEGG COMPOUND (27)   
Chemical reaction (11)   
   KEGG ENZYME (1)   
   KEGG REACTION (10)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (15)   
   Pfam (15)   
All databases (84)   

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