KEGG   Sphingobium sp. YBL2: TZ53_05805
Entry
TZ53_05805        CDS       T03855                                 
Name
(GenBank) AMP-dependent synthetase
  KO
K01897  long-chain acyl-CoA synthetase [EC:6.2.1.3]
Organism
syb  Sphingobium sp. YBL2
Pathway
syb00061  Fatty acid biosynthesis
syb00071  Fatty acid degradation
syb01100  Metabolic pathways
syb01212  Fatty acid metabolism
syb02024  Quorum sensing
Module
syb_M00086  beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:syb00001]
 09100 Metabolism
  09103 Lipid metabolism
   00061 Fatty acid biosynthesis
    TZ53_05805
   00071 Fatty acid degradation
    TZ53_05805
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    TZ53_05805
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:syb01004]
    TZ53_05805
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:syb04147]
    TZ53_05805
Enzymes [BR:syb01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.3  long-chain-fatty-acid---CoA ligase
     TZ53_05805
Lipid biosynthesis proteins [BR:syb01004]
 Acyl-CoA synthetase
  Long/very long chain acyl-CoA synthetase
   TZ53_05805
Exosome [BR:syb04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   TZ53_05805
  Exosomal proteins of breast cancer cells
   TZ53_05805
SSDB
Motif
Pfam: AMP-binding AMP-binding_C
Other DBs
NCBI-ProteinID: AJR23334
UniProt: A0A0C5X2P9
Position
complement(1229851..1231332)
AA seq 493 aa
MSGDVIVGDRIRGRAELLDRAARLASAMAAAGVGAGDAVALLLRNDFAVLEANLAVRRLD
AYGVPINWHWHPTEIGYVLRDATPRLLIGHADLLDGLGAHIPEGLRVIAVGGSGEQPDYD
DWIAAHEPHEGHGNGLGSSMVYTSGTTGKPKAVRRLPATGEESAQRARVLAVIHDTAPGN
VALVTGPLYHLFSQAILMATFAAGGTVVVMERFDPEDCLRLIEQHHVTHGALVPTLFVRL
LRLPEEVKGRYDLSTLRHVVHSGAPCAPEVKRAMLNWWGPVLYETYGSTETGVVTKISPR
EWLARPGSVGRPVLTGEVRIRGEDGQWTEAGRTGDVYLRIHGTPDFTFHGDPEKRAAVEY
DGLITCGDMGWLDEEGYLFLCDRRADMVLSGGVNIYPAEVEAALLEHPAVSDCAVFGVPD
SEYGEVLVAYLQSDEALIPDEVTAFLRGRIAGYKIPRHLVVGASLPREETGKILKRRLRE
SFLAGEARETGAY
NT seq 1482 nt   +upstreamnt  +downstreamnt
atgagcggcgatgtgatcgtcggcgatcgcattcgcggacgcgccgaactgctcgaccgg
gcggcgcggctggcgagcgcgatggcggcggcaggcgtcggcgcgggcgatgcggtggcg
ctgttgctgcgcaacgactttgccgtgctggaagccaatctggccgtgcgcaggctcgac
gcctatggcgtgccgatcaactggcactggcacccgacggagatcggctatgtgctgcgc
gacgcgacgccccggctgctgatcggccatgccgacctgctggacgggctgggcgcccat
attcccgaaggcctgcgcgtgatcgccgtcggcggttcgggcgagcagccggattatgac
gactggatcgctgcccatgaaccccatgagggccatggcaacggtctcggttcctccatg
gtctacacgtcgggcaccacgggcaagcccaaggcggtcaggcgcctgcccgcgacaggc
gaggaatcggcgcagcgcgcccgtgtgctggcggtcatccatgacacggcgcccggcaat
gtcgcgctggtgacgggaccgctctatcatctcttcagccaggcgatcctgatggcgact
ttcgccgccgggggcacggtggtggtgatggagcgcttcgatccggaggattgcctgcgg
ctcatcgagcagcatcatgtgacccatggcgcgctggtgcccacgcttttcgtcaggctg
ctgcgcctccccgaagaggtgaagggccgatatgatctctccacccttcgtcacgtcgtc
cattcgggcgcgccctgcgcgccggaagtaaaaagggcgatgctgaactggtgggggccg
gtcctgtatgaaacctatggatcgaccgaaaccggcgtcgtcacgaagatcagtcctcgg
gaatggctggctcgacccggcagcgtcggccgacctgtcctgactggtgaagtccgtatt
cgtggcgaagacggccaatggacagaggcggggcggacgggcgacgtctacctgcgcatc
cacggcacgcccgatttcacttttcacggcgatccggaaaagcgcgccgccgtcgaatat
gacggccttattacctgcggcgacatgggctggctggacgaagaaggctatctgtttctg
tgcgaccggcgcgcggacatggtgttgtccggcggggtcaacatctatccggcagaggtg
gaggctgccttgctggagcatcccgcggtatccgattgcgctgtcttcggcgtgccggac
tccgaatatggtgaagtgctggtcgcgtatctccagagcgacgaggcgctgatccccgat
gaggtgacagcgttcctgcgcgggcgcatcgcgggctacaagattccgcgtcatctggtc
gtcggcgccagcttgccgcgcgaggaaacgggaaagatcttgaagcgcaggctgcgggaa
agtttcctggccggcgaagcgcgggaaacgggagcatattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (28)   

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