KEGG   Synechococcus sp. CC9902: Syncc9902_0519
Entry
Syncc9902_0519    CDS       T00293                                 
Name
(GenBank) putative DNA-directed RNA polymerase (omega chain)
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
sye  Synechococcus sp. CC9902
Pathway
sye03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sye00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Syncc9902_0519
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sye03021]
    Syncc9902_0519
   03400 DNA repair and recombination proteins [BR:sye03400]
    Syncc9902_0519
Enzymes [BR:sye01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Syncc9902_0519
Transcription machinery [BR:sye03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Syncc9902_0519
DNA repair and recombination proteins [BR:sye03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Syncc9902_0519
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: ABB25487
CyanoBase: Syncc9902_0519
UniProt: Q3AZJ0
Position
532347..532595
AA seq 82 aa
MIECSWLVISAGVDSSDLAKRGESLIRQSSNRYLTTVRIAFRAKQRRFDDFDGLLEESSV
KPVQRAIVELSDEQDQPDLLPG
NT seq 249 nt   +upstreamnt  +downstreamnt
ttgattgaatgcagttggcttgtgatttcggcaggggttgattcaagtgatcttgccaag
cgtggcgagagcctgatccggcaatccagcaatcgttatctcaccacagttcgcatcgcg
tttcgtgcgaagcagcggcgtttcgacgacttcgatggcttgctggaggaatcgagtgtg
aaaccggtgcaacgggccatcgttgagttaagcgatgagcaagatcagcctgatctgttg
cctggctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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