KEGG   Synechococcus sp. CC9311: sync_2806
Entry
sync_2806         CDS       T00390                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
syg  Synechococcus sp. CC9311
Pathway
syg03030  DNA replication
syg03410  Base excision repair
syg03420  Nucleotide excision repair
syg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:syg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    sync_2806 (ligA)
   03410 Base excision repair
    sync_2806 (ligA)
   03420 Nucleotide excision repair
    sync_2806 (ligA)
   03430 Mismatch repair
    sync_2806 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:syg03032]
    sync_2806 (ligA)
   03400 DNA repair and recombination proteins [BR:syg03400]
    sync_2806 (ligA)
Enzymes [BR:syg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     sync_2806 (ligA)
DNA replication proteins [BR:syg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     sync_2806 (ligA)
DNA repair and recombination proteins [BR:syg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     sync_2806 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     sync_2806 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     sync_2806 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      sync_2806 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD HHH_5 PTCB-BRCT BRCT_2 zf-NADH-PPase
Other DBs
NCBI-ProteinID: ABI46368
CyanoBase: sync_2806
UniProt: Q0I6C8
Position
2469232..2471325
AA seq 697 aa
MSNSQPPRSSSSSQERAEELRRLLNRAAHAYYVLDAPDMEDPVYDQLYRELQDLEHQDST
LVSADSPTQRVGGRLADGFRSVSHRISLFSLDNAFNRDELHGWYSRLLKALDRTPAAGSP
PPTLPMVGELKIDGNALALSYENGVLVRAATRGDGEQGEEITANVRTISSIPLRLHLEPV
PAWVEVRGEAFIPDATFHAINNERLSRDESLFANPRNACAGTLRQLDPSVVAARRLDFFA
YTLHLPDEWQERRPLTQWDALQWLGDAGFKVNPNAGLLPDLQAVEQFFDTWDTERRQLDY
ATDGVVVKLNDLRLQDAAGFTQKAPRWAIALKYPAEEAPSKILRISYQVGRTGVITPVAE
FEPVGLAGTSVSRASLHNADRLVELDLHDGDTIVVRKAGEIIPEVVRVLPELRPALAQPL
EITKTCPACGSTLVRESNESATRCINSSCPAILRGALRHWVSKGAMDIDGLGSKLIEQLV
DRGLVQSIADLYRLDMALLGSLERMGSKSAENLIQALNASRSQGWAKQLYGLGIHHVGDV
NAKAITTAFPNADSLNQAACHAPESITAIFGVGKEIAQSLQQWFSSPANQRLLDELRSLG
FSLSLNEEEQSRATTAAANHHLTGSTFVLTGTLPTLTRSQAKEQIEACGGKVSGSVSKKT
SYLVAGEEAGSKLTKAQELGVSILDEEALQNMLRGST
NT seq 2094 nt   +upstreamnt  +downstreamnt
ttgagcaactcgcagccgccgagatcgtccagcagctctcaagagcgagcggaggaattg
cggcgcctgctcaatcgggctgctcacgcttattacgtgctcgacgctccggatatggaa
gatccggtctatgaccagctctatcgggagctgcaggatttagagcaccaagattcaaca
ttggtcagcgcagacagtcccacccagcgcgtgggtggacgcctggctgatggattcagg
agcgtgagccacaggatttccctgttcagcctcgacaatgcgtttaaccgtgacgagctc
catggctggtatagccggttgctcaaggcgcttgatcgcacacccgcagcaggatctcca
ccgccgaccctgcccatggtgggagagctcaaaatcgatggcaacgccctcgccctgagc
tatgaaaacggcgtactcgttcgggcggcaacccgcggggacggtgaacagggagaagag
atcaccgccaacgtgcgcaccatcagctccattcccttgcgtttgcacctcgaaccggta
ccagcctgggtggaagtgcgcggggaggccttcatccccgatgccacctttcatgcgatc
aacaacgaacgcctaagccgcgacgaatctctctttgccaatccccgcaatgcctgcgcg
ggaacgttgcgccaactcgatccaagcgttgttgctgcaagacggctggactttttcgcc
tacacgcttcacctcccggacgagtggcaagagcgccgaccgctcacgcaatgggatgcc
ctgcaatggctgggagatgcgggattcaaggtgaatccaaatgcaggtttgttgccagat
cttcaagccgtggagcagttcttcgacacctgggatacagagcgacggcagctcgattac
gccaccgatggagtagtggtaaagctcaatgatttacggctgcaggatgccgcaggattc
acccaaaaagcaccacgttgggcgattgcgctcaagtacccagcggaggaagctccaagc
aagatcctaaggatcagctaccaggtgggacgcacgggagtgatcaccccggtggccgaa
tttgaacctgtgggtttagccggcacgagcgtcagccgggccagccttcacaacgccgac
aggctggtggagctcgatctccacgacggcgacaccattgtggtgcgcaaggccggagaa
atcatcccggaagtggtgcgggtgttgccagagctacgacctgcactggctcaaccccta
gagatcaccaagacctgtccagcctgcggatccaccttggtgcgcgaaagcaacgaatcg
gccacgcgctgcatcaacagcagctgcccggcgatcctgcgtggtgccctacgccactgg
gttagcaaaggggccatggatattgatggcctgggtagcaagctgattgaacaactggtg
gatcgaggcctcgttcaatcgattgcagacctatatcgcctcgatatggccctgctcggc
agcctcgagcgcatgggctcgaaaagcgccgagaatttaattcaagccttgaacgcctcc
cgctctcaaggatgggccaaacagctgtacggcctcggcatccatcacgtcggagacgtg
aacgccaaggcgattaccactgcttttcccaatgcagacagcctgaatcaagcggcttgt
cacgcaccagagagcatcactgccatttttggtgtcggcaaagaaattgctcaaagcttg
cagcagtggttttccagcccggccaatcagcggctactcgatgagttgcgcagccttgga
ttcagcctgtccctcaatgaggaagaacaatcgcgagcaactacagcggcagcaaaccat
cacctcaccggttccacctttgtgctgaccggtaccttgcccactctcacccgctctcaa
gccaaagaacaaatcgaggcctgcggcggcaaagtgtcgggttccgtcagtaaaaaaacc
agctatctcgtggcaggcgaagaggccggaagcaaactcacaaaagcccaggaactgggg
gtcagcattcttgatgaggaggctctgcagaacatgctgagaggatcaacctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (9)   
   Pfam (9)   
All databases (31)   

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