KEGG   Sediminicola sp. YIK13: SB49_02010
Entry
SB49_02010        CDS       T04145                                 
Name
(GenBank) DNA polymerase III subunit gamma/tau
  KO
K02343  DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
Organism
syi  Sediminicola sp. YIK13
Pathway
syi03030  DNA replication
syi03430  Mismatch repair
syi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:syi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SB49_02010
   03430 Mismatch repair
    SB49_02010
   03440 Homologous recombination
    SB49_02010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:syi03032]
    SB49_02010
   03400 DNA repair and recombination proteins [BR:syi03400]
    SB49_02010
Enzymes [BR:syi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SB49_02010
DNA replication proteins [BR:syi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SB49_02010
DNA repair and recombination proteins [BR:syi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SB49_02010
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA AAA_22 RuvB_N AAA_14 DNA_pol3_gamma3 Rad17 AAA_5 AAA_30 AAA_24 DNA_pol3_delta_C TIP49 AAA_16 DNA_pol3_delta AAA_7 nSTAND3 AAA_assoc_2 AAA_18 RNA_helicase AAA_2 Mg_chelatase DUF815 T2SSE AAA_28 SRP54 NACHT IstB_IS21 YonK AAA_33
Other DBs
NCBI-ProteinID: ALM06716
UniProt: A0A0S1S7X0
Position
complement(431632..433446)
AA seq 604 aa
MEPFVVSARKYRPQTFKDVVGQQAITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILA
KKINEDGTEHTDEDFAFNIFELDAASNNSVDDIRNLTDQVRIPPQTGKYKVYIIDEVHML
SQAAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQIFDFKRITVKDAAAYLKYIA
ENQEIEADDDALHIIAQKADGAMRDALSIFDRVVSFSGKKLTRKAVTENLNVLDYDTYFS
ATDLILAHNIPGLLMLFNETLSQGFDGHHFISGLASHFRDLMVCQHEDTIALLEVGDEAK
KNYLEQSKKVSSSFLMQGIDIANDCDLKYKSSKNQRLLVELSLMKLASIDFDGQKKKSDR
LGISDFLIPASFFKGQANAKPTPKREESNGAVATNPSPKATDRPQAQKPLVANEESATEV
LVAEPPIEINSPSDEANKKGDTPKPALNIPTKRVSGLSISSLKAKKEHELNRKDETVDER
QLPKDAFTEEEMRAHWAEFVEIIDKDGRKILASNLNTDIPKLKDQTTLWIELPNGTMKKE
VEREQYDLMEYLRLKLNNHFISLTITVNEETAKKFAFTPLEKYEKLREKNPVIDILRKEF
DLDF
NT seq 1815 nt   +upstreamnt  +downstreamnt
gtggaaccatttgtagtatctgccagaaaatatagaccccaaacgttcaaggatgttgtg
gggcaacaggctattacaaacaccctgctcaatgccatagagaacaaccatttggcccag
gcccttcttttttgtggcccaagaggtgtgggaaagaccacatgtgccagaatcttggca
aagaaaataaatgaagacggtaccgaacatacagatgaagattttgcattcaatattttt
gagctggatgctgcctccaacaattctgtagatgatataagaaaccttacggaccaagtg
aggattccaccccagactggaaagtacaaggtgtacatcattgatgaggtacatatgtta
tcccaggcagccttcaatgcatttttgaagacgctggaggagccgcccaaacatgccatc
tttattttggcaaccacagaaaaacataagatcatccctactattttatcccgttgtcaa
atttttgattttaaacggatcacggtaaaggatgcggcagcatatttaaaatatattgca
gaaaaccaggaaatagaagcggacgatgacgccctgcatattattgcccaaaaggcagat
ggggccatgcgcgatgctctttccatctttgacagggtcgttagtttttcagggaaaaaa
ttgacgagaaaggcggtaaccgaaaatttgaacgttcttgattacgatacctacttttcg
gccacagatctaatcctcgctcataatatccctggtttattgatgttgtttaacgaaacc
ttatcccaaggcttcgacggacaccattttatatcgggcttggcttcccattttagagat
cttatggtctgtcaacatgaagataccatagcacttttagaggtaggggacgaagccaaa
aagaattatctggaacaatccaaaaaggtatccagttcctttttaatgcaaggtattgac
attgcaaatgattgtgatctcaagtacaagtccagtaaaaaccagcgacttctcgtagag
ctgtcccttatgaaactggcttccatcgacttcgatggccaaaaaaaaaaatctgatcgt
ttaggaatcagtgactttttaataccagcctctttttttaaaggtcaagcaaatgcaaaa
cctactccaaaaagagaagaatcgaatggggctgttgccaccaacccttcacccaaggca
acagacagacctcaagcacaaaaaccgctagtagccaacgaagaatcagctacagaagtt
cttgtagcagaaccccctattgaaattaatagtccctctgacgaggctaataaaaaggga
gacaccccaaaaccagccttaaatattcccacaaaaagggtgtcaggcctctccatatct
agcttaaaggccaaaaaagagcatgagctgaacagaaaggacgagaccgttgatgagcgc
caattacccaaagatgcatttaccgaagaggagatgagggcacattgggcagaatttgtg
gaaataatcgataaggacggtagaaaaatcttggcttccaatctaaatacggacattcca
aaacttaaggatcaaaccaccttatggatagaacttccaaatggcactatgaaaaaagag
gtggagcgggaacagtatgacctaatggaataccttaggttaaaactgaacaaccatttc
attagccttaccataaccgttaatgaggaaactgcaaaaaagtttgcctttactcctttg
gagaagtacgagaaattaagggaaaagaatccggtaatcgatattttgagaaaagagttt
gatctggatttttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (36)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (29)   
   Pfam (29)   
All databases (78)   

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