KEGG   Sediminicola sp. YIK13: SB49_03050
Entry
SB49_03050        CDS       T04145                                 
Name
(GenBank) tRNA-splicing ligase
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
syi  Sediminicola sp. YIK13
Brite
KEGG Orthology (KO) [BR:syi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:syi03016]
    SB49_03050
Enzymes [BR:syi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     SB49_03050
Transfer RNA biogenesis [BR:syi03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    SB49_03050
 Prokaryotic type
   tRNA splicing ligases
    SB49_03050
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: ALM06893
UniProt: A0A0S1SCC8
Position
complement(682543..683991)
AA seq 482 aa
MKIGKQHLNKIEDYLWEIPKSFHKNMLVPARVLAHEPILDDIIGDRSLVQLVNVASLPGI
QGASWVMPDVHEGYGFPIGGVAATSHPDGAISPGGIGYDINCGVRLLTSIIMVEEVKDKI
EALSKEMYAQIPSGMGKGGFLHLTQKELEDVLSQGAKWAVDKGYGKTKDLAFIENNGRLP
DADPSKVSERAKSRGLDQLGTIGSGNHFVEVDFVDEIYEPDVAEAFGLKKGQLVVLIHTG
SRGLGHQIATDHIKIMMTAMDKYGIQVPDRELTCVPFSSLEGQNYYKAMCAAANYAWANR
QVITWEARKAWANIFGKDHGQLELMYDVAHNMAKLETHKVDGKPHPLIVHRKGATRAFGP
GFSELPESYNLLGQPVIIPGSMGTSSYILIGTSKSHDLTFGSCCHGAGRRLSRTASKKQV
NAPQLKEQLKERGIYVQAGSFKGIAEEAPIAYKDVNLVVETVSDAGIAKKVAKLRPVAVV
KG
NT seq 1449 nt   +upstreamnt  +downstreamnt
atgaaaatcggcaaacaacatcttaacaaaattgaggactatctgtgggaaatccctaaa
tcgttccataaaaatatgttggtccccgcaagggtattggcccatgaacccattttggac
gacatcataggggacaggtcattggtacaattggtcaatgtggcaagtttgcccggtatt
cagggagcttcttgggtaatgccagacgttcatgaaggttatgggttccctattgggggt
gttgctgctacttcacatcctgacggtgccatttctccagggggaattggatatgacatc
aattgtggggttcgcttactaacctcaatcataatggtagaggaggtgaaggacaaaata
gaagcgttatccaaggaaatgtacgcccaaattccttcgggaatgggtaaaggagggttt
cttcatcttacccaaaaagagttggaagatgtgttgtcccaaggggccaaatgggctgtt
gacaaaggctatggcaaaacaaaagatctcgcatttattgagaacaacggacgcttaccg
gacgcggacccctccaaagtttctgaaagggcaaaaagtaggggcctggaccagcttggc
accataggctcgggtaaccattttgtggaagtggattttgtggatgaaatatatgaaccg
gatgtcgccgaagcctttggattaaaaaaaggacaattggtggtgctgatccatacaggc
tccaggggacttggacaccaaatagccacagaccatataaagatcatgatgaccgccatg
gataaatatggcatacaggttcccgatcgcgagctcacctgtgttccttttagttctctt
gaaggtcaaaattactataaggccatgtgtgctgcggccaattatgcatgggccaacagg
caggtaattacttgggaggccagaaaagcatgggccaacattttcggaaaggaccatggc
caacttgaactcatgtatgatgtggcccacaacatggccaaactagaaacgcacaaggta
gatggcaaaccacatcctttgattgtacatagaaaaggagcgaccagggcttttggacca
gggttcagcgagctaccggaatcctataaccttttaggccaaccagtcattattccgggc
agtatgggcacaagttcctatatcctgataggcacctccaagagccacgaccttacgttt
ggttcctgttgtcacggtgccgggcgacgcttgtccagaaccgcctcaaaaaaacaagta
aatgcaccacaattgaaggaacaattaaaagaaaggggtatctacgtgcaggccggttcg
ttcaaaggaattgccgaggaggcgccaatagcatacaaggacgtcaatctagtagtggaa
accgtatctgatgccggaattgcaaaaaaggtggccaagttaaggcctgtggctgtggtg
aaagggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system