KEGG   Synechocystis sp. PCC 6803: sll0306
Entry
sll0306           CDS       T00004                                 
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
  KO
K03087  RNA polymerase nonessential primary-like sigma factor
Organism
syn  Synechocystis sp. PCC 6803
Brite
KEGG Orthology (KO) [BR:syn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:syn03021]
    sll0306 (rpoD)
Transcription machinery [BR:syn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     sll0306 (rpoD)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 Sigma70_r4_2 DUF2316 HTH_28 HTH_25 HTH_20
Other DBs
NCBI-ProteinID: BAA10020
CyanoBase: sll0306
UniProt: Q55525
Position
complement(2269126..2270163)
AA seq 345 aa
MVTVTVILLLFIKESFRMPTANLSSPTSPPTFTADMVRSYLHEIGRVPLLTHEQEIILGK
QVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGERAKRKMIEANLRL
VVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQ
GRTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEVAKALEIDPSQIREYLSLSRQPIS
LDVRVGDNQDTELSELLEDEGVSPDAYITQESMRQDLQNLLAELTPQQQAVLTMRFGLND
GQELSLAKIGQHLNISRERVRQLENQALAQLKRRRANMAEYIIAS
NT seq 1038 nt   +upstreamnt  +downstreamnt
atggtaacagtgacagttattctgttgctcttcattaaggagtcattccgaatgcccacc
gccaatctctcctcccctacctccccccccactttcaccgccgatatggtgaggtcctat
ctccatgaaattggtcgggtacccctgttaacccatgagcaagaaattatcctcggtaaa
caagtccaacaaatgatggccctgctggagcacaagaaagccctggctgacagattgggc
cgagagccctccgacccggaatgggcggaagcggcggatttgtcggtgacgaaattacac
cgctatctgggccaaggggaacgggccaaacggaaaatgattgaagctaacctccggttg
gtggtggcgatcgccaagaaatatcagaagcgcaatatggagtttttggatttgatccaa
gaaggtagcctgggtttagaacggggggtggaaaaattcgaccccaccaagggttataaa
ttctccacctatgcctactggtggattcgccaagccatcacccgggcgatcgcccaacag
ggccggactatccgtttgcccattcatatcactgaaaagttaaacaaaatcaaaaaaacc
caacgggaactttcccaacaattgggccgcagtgccacccccgccgaagtagccaaggct
ctggaaattgaccctagtcaaattcgcgagtacctcagtctgtcgcgccaacccatctcc
ctcgatgtgcgggtgggggataatcaggacacagaattgtccgaactcttggaggacgaa
ggggtttcccccgatgcttacatcacccaggagtccatgcgtcaagacctgcaaaattta
ctggcggaattaacaccccagcaacaggctgtgctgaccatgcgttttggtcttaacgat
ggccaagagctatctttggctaaaatcggccagcatctcaacatcagccgggaaagggtc
cgccaattagaaaaccaagcccttgcgcaactgaagcgtcggcgggctaatatggcagag
tatattatcgccagttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system