KEGG   Synechocystis sp. PCC 6803: slr0551
Entry
slr0551           CDS       T00004                                 
Name
(GenBank) hypothetical protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
syn  Synechocystis sp. PCC 6803
Pathway
syn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:syn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    slr0551
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:syn03019]
    slr0551
Messenger RNA biogenesis [BR:syn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     slr0551
SSDB
Motif
Pfam: RMMBL Lactamase_B RNase_J_C Lactamase_B_2
Other DBs
NCBI-ProteinID: BAA10871
CyanoBase: slr0551
UniProt: P54123
Position
3250985..3252907
AA seq 640 aa
MAKNTQTQALKILPLGGLHEIGKNTCVFEYDDEILLLDAGLAFPTDDMHGVNVVLPDMTY
LRENREKIKGMVVTHGHEDHIGGIAYHLKQFDIPIIYGPRLAMALLRDKLEEAGMLERTN
LQTVSPREMVRLGKSFVVEFIRNTHSIADSYCLAIHTPLGVVMHSGDFKIDHTPIDGEFF
DLQKVAEYGEKGVLCLLSDSTNAEVPGITPSEASVIPNLDRVFSQAEGRLMVTTFASSVH
RVNIILSLAQKHQRKVAVVGRSMLNVIAHARKLGYIKCPDNLFVPLKAARNLPDQQQLIL
TTGSQGEPLAAMTRISNGEHPQIKIRQGDTVVFSANPIPGNTIAVVNTIDRLMMQGANVI
YGKHQGIHVSGHASQEEHKMLLALTRPKFFVPVHGEHRMLVKHSQMAQAQGIPSENIVIV
NNGDVIELTGDRIRVAGQVPSGIELVDQAGIVHESTMAERQQMAEDGLVTVAAALSKTGT
LLAYPEVHCRGVVMTIQPKLLEELIVRTIENFLTERWSEFTHGSNGSTEVSWNALQKELE
SSLQRLIKRELQSSPMVLLMLQTDTPIELDQVPQNVSTVSATSATPAPRKKVVLTKTPEP
KVKAKPEKKVVTTAEPSAQPVSTTKVYRRSRKRSTTSVSS
NT seq 1923 nt   +upstreamnt  +downstreamnt
atggctaaaaatactcaaacccaagccctcaaaattcttcccctcggtggcctgcacgaa
attggtaaaaatacctgcgtctttgaatatgacgatgaaattttactgcttgatgcgggg
ctagctttccccaccgacgacatgcacggcgttaatgttgtactgccggacatgacctac
ctgagggaaaaccgggagaaaatcaagggcatggtggttacccacggccacgaagaccac
attggtggcattgcctatcacctcaagcagtttgacattcccattatctacggccctcgg
ttagccatggccctgttacgggacaagctggaggaagccggtatgttggagcgcaccaat
ttgcagaccgtctctccccgggaaatggtgcgtttgggcaaatcctttgtggtggaattt
attcgtaacacccactccatcgccgacagctattgtctagctattcacacacctctgggg
gtagtgatgcacagtggagattttaaaatcgaccacactcccattgacggggaatttttc
gacctgcaaaaggtggcggagtatggcgaaaaaggggtgctctgtttactgagtgactcc
accaatgcggaagtgcctggcattaccccctctgaagcgtctgttatccccaacctggac
cgggttttttcccaggcggaaggccgtttgatggtgaccacctttgcttcttcggtgcac
cgggtcaatatcatcctcagcttggcccaaaaacatcagcggaaagtagcggtggtgggg
cgatcaatgctcaatgttattgcccatgcccgtaaattgggctacatcaaatgccccgat
aacttattcgtgcccctcaaagcagcccgcaatttgcccgaccaacaacaactaattttg
accactggctcccagggagaacctctggcggccatgacccgcatttccaacggtgagcat
ccccagattaaaattcgccagggggatacagtggtcttttccgctaatcccatccccggt
aataccattgcggtggtcaacaccattgatcgcctgatgatgcagggagccaatgtaatt
tacggcaagcatcagggcatccacgtttctggccatgcttcccaggaagaacacaaaatg
ttgttggcccttactcgacctaaattctttgtccccgtccatggggaacaccgtatgttg
gtcaagcattcccagatggcccaggcccagggtattcccagcgaaaatattgttattgtc
aataacggcgatgtaattgaactgaccggcgatcgcatccgggtggcaggacaagttcct
tccggcattgaattggtggatcaagcgggtattgtccatgagagcaccatggctgaacgg
caacaaatggccgaagacggtttggtgacggtggcggcagccctaagtaaaactggcaca
ctgttagcctatcctgaggtacattgccggggtgtggtgatgaccattcagcctaagttg
ttggaagaactaattgtccgcaccatcgagaatttcctcacagaacgctggtcagagttc
acccatggttccaacggctccacagaggttagctggaatgcgctgcaaaaagaattggag
tctagcttgcaacgcctgatcaaacgggaattacagagtagccccatggttttactgatg
ttgcaaaccgacacccccatcgaattggatcaggttccccagaatgtaagcactgtcagt
gcgacttctgctacaccagccccccgcaaaaaagtggtcctgactaaaaccccagaacca
aaagtgaaagctaaaccagaaaagaaagtggtcaccactgccgagcctagcgcccaaccg
gtcagtaccactaaggtttaccgtcgtagccgcaaacgctctaccacttctgtttcttcc
taa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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