KEGG   Synechocystis sp. PCC 6803 GT-I: SYNGTI_0010
Entry
SYNGTI_0010       CDS       T01777                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
syt  Synechocystis sp. PCC 6803 GT-I
Pathway
syt03030  DNA replication
syt03410  Base excision repair
syt03420  Nucleotide excision repair
syt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:syt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SYNGTI_0010 (ligA)
   03410 Base excision repair
    SYNGTI_0010 (ligA)
   03420 Nucleotide excision repair
    SYNGTI_0010 (ligA)
   03430 Mismatch repair
    SYNGTI_0010 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:syt03032]
    SYNGTI_0010 (ligA)
   03400 DNA repair and recombination proteins [BR:syt03400]
    SYNGTI_0010 (ligA)
Enzymes [BR:syt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SYNGTI_0010 (ligA)
DNA replication proteins [BR:syt03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SYNGTI_0010 (ligA)
DNA repair and recombination proteins [BR:syt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SYNGTI_0010 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SYNGTI_0010 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     SYNGTI_0010 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SYNGTI_0010 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 Auto_anti-p27 HHH_3
Other DBs
NCBI-ProteinID: BAL27757
Position
complement(10622..12631)
AA seq 669 aa
MTTPDRLLQLRQQLQKASYAYYVLDAPVMEDSVYDQLYRELQRLEAENPELITPDSPTQR
VGEQPASQFRSVAHNIPLYSLENAFNVQELQQWQERWQRIAPTIEKAEYVCELKIDGSAI
ALTYENGLLVRGVTRGDGTTGEEISQNIKTIRSIPVKLNLDNPPPTVEVRGEAFLPLEEF
NRINHEREAQGESLFANPRNAAAGTLRQLDPKIVHQRRLQFFAYTLHLPGQEDKIQSQWQ
ALEYLKKAGFMVNPHCQLCKGLDEVVAYFEDWEGARQRLPYMTDGVVVKINQYPLQRELG
FTQKFPRWAIALKYPAEETPTVVKAIEVNVGRTGAVTPLAVMEPVQLAGTTVQRATLHNQ
DRIQELDIRVGDTVIIRKAGEIIPEVVRVMTELRPENTTPYIFPSHCPACGSPLVRPLEE
AVIRCVNSSCSAILQGSLIHWASRNALDIQGLGEKVVITLLENRLVNSVADLYGLQVEQL
LGLERFAQKSAEKLIAAIEVSKSQPWSRILFGLGIRHVGQVNAKLLSQQFPTVEKLSQAS
IPDLEGVYGIGPEIAEAVVNWFRNPGNQQLIQDLEELGLVLANQGIDQTKTDSGKLKGKT
FVLTGTLPNLSRLEAQELIEQSGGKVTSSVSTKTDYVLLGDKPGSKAAKAESLGIKLLSE
AEFLQLLEP
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgaccacccccgatcgcctattgcaactgcgccaacaactccaaaaagccagctacgcc
tactatgtactggatgcgccggtcatggaggacagcgtttacgaccagctttaccgggaa
ctgcaaaggctagaggcagaaaatccggagttaattacccccgacagtccgacccaacga
gtgggggagcaaccggccagtcagttccgctctgttgcccataatattcccctctacagc
ctagaaaatgcctttaatgtgcaggaattacaacagtggcaagaacgctggcaacgcatt
gccccaaccatcgaaaaggctgaatacgtctgtgagctaaaaattgacggctcggcgatc
gccctgacctatgagaatggtttgttggtgcggggggtaactaggggagacggcaccacc
ggggaagaaattagccaaaatattaaaaccattcgatccattcccgtgaagcttaattta
gataatcctcccccaacggtggaagtgaggggggaagcctttttgcccctagaagaattt
aatcgtattaatcacgagcgggaagcccagggagaaagcttatttgccaatccccgtaat
gccgccgccggtactctccgtcagttggaccccaaaatagtccaccaaagacgcttacaa
ttttttgcctatacgctccatttaccagggcaagaagacaaaatccaaagtcaatggcaa
gctttggaatatctcaaaaaagctggctttatggttaatccccattgtcagctctgtaaa
ggtttagatgaagtagtggcatattttgaagactgggaaggcgcccggcaacgcttaccc
tatatgaccgacggggtggtggtgaaaattaatcagtatcccctgcaaagagagttaggc
ttcacccaaaaatttccccgctgggcgatcgccttaaaatatcctgccgaagaaaccccc
accgtagtcaaagccattgaagttaatgtgggccgcaccggcgcagtcacccccctagcc
gtgatggagccagtacagttagccggcaccacggtacaaagagccactctgcataaccaa
gaccgcatccaagaattagatatccgggtgggggacacggtaattattcgcaaagcaggg
gaaattatccccgaagtggtccgggtaatgacagaattgcgcccggaaaacaccaccccc
tacatttttccttcccattgcccggcctgtggttcccccttggtccgacccctggaagaa
gctgtcatccgttgtgtcaatagttcctgctccgctattttgcaaggcagtttaattcac
tgggctagccgcaacgctttggatatccagggtttgggggaaaaagttgtgattacgctc
ttggaaaatcggttagtcaactccgttgctgatttatatggtttacaggtggagcagttg
ttaggattagaacgttttgcccaaaaatccgccgaaaaattaattgccgccattgaagtt
agcaaaagccaaccctggagccgcattttatttggcttaggtatccgccatgtgggccag
gtaaatgccaaattactcagccaacagtttcccaccgtggaaaaactaagccaagccagc
attcccgacctggaaggagtctatggcattggcccagaaattgccgaagccgtggttaat
tggttcaggaaccccggtaatcaacaattaattcaagatttagaggagttgggtttagta
ttggcaaaccaagggattgaccagaccaaaactgacagcggcaagttaaagggcaaaacc
tttgtgttaaccgggactttgcccaaccttagtcgcctagaagctcaggaattaattgaa
cagagcggcggtaaagtaaccagcagtgtaagtaccaaaactgattatgttctcttggga
gataaaccaggaagtaaggccgccaaggcggaaagtttgggcatcaagttactatctgag
gcggagtttttacaattgttggagccgtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (30)   

Download RDF
DBGET integrated database retrieval system