KEGG T01777: SYNGTI

Synechocystis sp. PCC 6803 GT-I: SYNGTI_0080

Entry

SYNGTI_0080       CDS       T01777

Symbol

rne

Name

(GenBank) ribonuclease E

K08300

ribonuclease E [EC:3.1.26.12]

Organism

syt Synechocystis sp. PCC 6803 GT-I

Pathway

syt03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:syt00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SYNGTI_0080 (rne)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:syt03019]
    SYNGTI_0080 (rne)
   03009 Ribosome biogenesis [BR:syt03009]
    SYNGTI_0080 (rne)
Enzymes [BR:syt01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     SYNGTI_0080 (rne)
Messenger RNA biogenesis [BR:syt03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SYNGTI_0080 (rne)
Ribosome biogenesis [BR:syt03009]
Prokaryotic type
  rRNA processing factors
   SYNGTI_0080 (rne)

SSDB

Motif

Pfam:

RNase_E_G

Other DBs

NCBI-ProteinID:

BAL27827

Position

93128..95152

AA seq 674 aa
MPKQIVIAEKHQVAAVFWKDQIQELVVSTGSQQVGDIYLGLVDNILPSIDAAFINIGDTE
KNGFIHVSDLGPVRLRRTAGSISELLSPQQRVLVQVMKEPTGNKGPRLTGNISMPGRYMV
LMPYGRGVNLSRRINREEERSRLRALAVLIKPPGMGLLVRTEAEDVPEDAIIEDLENLQK
QWELVQQQAMTRSAPMLLDRDDDFIKRVLRDMYSSEVNRIVVDTPAGMKRIKQQLMNWDQ
GRLPEGVLIDCHRESLSILEYFRVNATIREALKPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTHSANSRETVLWTNYEAATEIARQLKLRNIGGVIIIDFIDMDSHKDQLQLLEHFNRCL
ETDKARPQIAQLTELGLVELTRKRQGQNLYELFGQPCPECGGLGHLVELPGEKGFVSLSP
TAVNSSIPPRLVEKPILSPPVAKVNDLPKKEEAKISSPLDLLFHPNYQEQGDRDSNRRRR
RRRGSEFSEKENIKSVGISRSKGPSPSPTKEKVTGTAPPRRERPSRRVEKTLVPVDVAMT
TLEQDIYARMGISPLIKTEYADQDPRSFMVSVVTAGAALEGNTNGSGSLVNAVITTVDNG
DNGDNVPSDGLTIVSEVTAPTPVIEQPREETVEPEQVVLPQLDDETPAAPVAEESAPIET
KKRPGRRRRRSSAE

NT seq 2025 nt +upstreamnt +downstreamnt
atgccaaaacaaattgtcattgctgaaaaacatcaggttgctgctgttttttggaaggat
caaattcaagaattggtggtgtccacgggcagccaacaggtgggagatatttatttaggc
ttagttgacaatattctgcccagcattgacgccgcttttattaacattggggacaccgaa
aaaaatggctttatccacgtcagtgacctcggcccagttagattaaggcgcaccgccggt
tccatttctgaacttttatctcctcaacaaagagtgttggtgcaggtgatgaaggaaccc
accggcaataagggcccccgcctaactggaaatatcagtatgccggggcgttatatggtg
ttgatgccctatggccggggagtgaatctttcccgtcggattaaccgggaggaggaacgc
agtcgtttgagggctttggctgtgttaatcaagccaccgggcatgggactgctagtgcgg
actgaagcggaagatgtgccggaagatgcgattatcgaagatttggaaaatctgcaaaaa
caatgggaattggtgcaacaacaggccatgacccgtagtgcccccatgcttctggaccgg
gatgatgatttcatcaagcgagtgctgcgggatatgtactccagcgaagtgaatcgcatt
gtggtggataccccggcggggatgaaacggattaaacaacagttgatgaactgggatcaa
ggtcgtttgccggagggagttttaattgattgtcaccgggaatccctcagtattctggag
tatttccgggtcaatgccactatccgggaagcccttaaacccagggtggatctgccttcg
gggggttatataatcattgagccgacggaagctttgacggtaattgacgttaactctggt
tcctttacccattcggccaattcccgggaaacggtgctctggactaactatgaagcggcg
acggaaattgcgcgtcagttgaaactgagaaatattggcggggtgatcattatcgatttc
attgatatggattcccataaggaccagttgcaacttttggagcattttaaccgctgcttg
gaaacggataaggccaggccccagatcgcccagttgacggagttgggactagtggagttg
acccgtaagcgccagggacaaaatttgtatgaactatttggacagccttgtcctgagtgt
ggtggtttaggacatttggtggaactccctggcgagaagggttttgtttccctgtccccc
acagcggtcaacagtagcattcccccccggttggtggaaaaaccgattctctctcccccc
gttgccaaggtcaatgacctgcccaagaaggaagaagcaaaaatatctagccccctggac
ttacttttccatcctaattatcaagagcagggcgatcgggatagtaaccgtcgtcgtcgt
cgccgtcgaggctcggagttttctgaaaaggaaaatattaaatctgtgggaatttcccgt
agtaagggtcccagccccagccccactaaggagaaagtgacgggcactgctcctccccgc
cgtgaacggccttcccgtcgagtggaaaaaaccttggttccggtcgatgtcgccatgaca
acgttggagcaggatatttatgctcgtatgggaatttctcccctaatcaaaacggagtac
gctgatcaagacccccgctcctttatggtttcggtggttacggcgggagcggccttggag
ggaaacactaacggtagtggcagtctggttaatgctgttattacaacggtggacaatgga
gacaacggggataacgtccccagtgatgggttgacaattgtatctgaggtcacagcccca
accccggttattgagcaaccaagggaggaaacggttgagccggaacaggttgtcttaccc
caacttgatgatgaaactccagccgctccggtggcagaggagtctgctcccatagaaaca
aaaaaacgtcctggcagaagacggcggcgttcttcagcggagtag

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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