KEGG   Synechococcus sp. WH 7803: SynWH7803_1098
Entry
SynWH7803_1098    CDS       T00524                                 
Symbol
rhlE
Name
(GenBank) Putative ATP-dependent RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
syx  Synechococcus sp. WH 7803
Pathway
syx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:syx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SynWH7803_1098 (rhlE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:syx03019]
    SynWH7803_1098 (rhlE)
Messenger RNA biogenesis [BR:syx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SynWH7803_1098 (rhlE)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 ERCC3_RAD25_C CMS1
Other DBs
NCBI-ProteinID: CAK23524
CyanoBase: SynWH7803_1098
UniProt: A5GKQ9
Position
1002516..1003715
AA seq 399 aa
MEALQAKGYSHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERLRHGKRAGRA
QIRALVLTPTRELAAQVLENVKAYSRHLPLRSDVVFGGVKANPQIDRLRGGVDLLVATPG
RLLDLHQQGALRFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPAKRQTLLFSATFSAPI
RKLASGLLHDPVHLQVTPENQTARSVEQVVHPCDMARKSDLLSHLIRTGEWRQVLVFSRT
KHGANRVADRLNKEGLAAAAIHGNKSQGARTRALQGFKQGSVRVLVATDIAARGIDIQQL
PHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIERLTGEELTRQTVD
GFEPTVLKAPPLDLSGGRRRSPGKPRARRAPSPVRGRHR
NT seq 1200 nt   +upstreamnt  +downstreamnt
ttggaagcactccaggccaagggctactcccacccatccccgattcaggcgcaggcgatt
ccggcagtgatcgatggcagggatgtgatggcagctgcacaaacgggtacggggaagaca
gctggtttcaccctgccggtgctggagagattgcgccatggcaagcgcgcaggacgggcc
cagattcgcgctcttgtgctgacgcccaccagggaacttgctgctcaggttttggagaac
gtgaaggcctacagcaggcatctgcctctccgcagcgatgttgtgtttggtggcgtaaag
gccaacccacagattgatcgcttgcgtgggggggttgatctgcttgtggccaccccaggg
cgtttgcttgatcttcaccaacagggtgctctgcgctttgaccagctcgaatgtctcgtg
ctggatgaagcggatcgcatgctcgatatgggcttcatccatgacatccgccgcctgatc
aggctgatgcctgcgaagcgccaaacgcttcttttttcagccacgttcagtgcgccgatc
cgcaagttggcatctggcctcctccatgatcctgtgcatcttcaggtcacgcctgaaaat
caaacggcgcgatcggtggagcaagtggtgcacccctgcgacatggcgcgcaagagcgat
ttgttaagccacctcattcgcacgggcgaatggcgtcaggtgcttgtgttttcacgcacg
aagcatggcgccaatcgggtggctgaccgtctcaacaaggaggggcttgcggcggcagcc
atccatggcaacaagagtcagggggcgcggacccgtgccttgcagggtttcaagcaggga
agcgtccgcgtgcttgttgccacggatatcgccgccagaggcattgatatccagcagctc
ccccatgttgtgaacctcgatctgccgaatgtggcggaagactatgtgcatcgcattggc
cgtaccggccgtgccggggaaacggggcatgccgtgtcccttgtggccgccgaagaagcg
ctactgctgaaagcgatcgagcggctgacgggagaagagctgacgcgacagaccgttgat
ggctttgaacccaccgtgctcaaagctccccctctggatctcagcggaggccgcagacgc
tcacccgggaaacccagagcgcgcagggcaccctcacccgttcgtggtcgtcatcgttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   CYANOBASE (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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