KEGG   Thermosipho africanus: THA_1709
Entry
THA_1709          CDS       T00797                                 
Name
(GenBank) rho transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
taf  Thermosipho africanus
Pathway
taf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:taf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    THA_1709
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:taf03021]
    THA_1709
   03019 Messenger RNA biogenesis [BR:taf03019]
    THA_1709
Transcription machinery [BR:taf03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     THA_1709
Messenger RNA biogenesis [BR:taf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     THA_1709
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 AAA_22 Spore_III_AA NACHT
Other DBs
NCBI-ProteinID: ACJ76145
UniProt: B7IDR8
Position
complement(1710533..1711798)
AA seq 421 aa
MSNNDAYNIKDLESMTIRDLYKLAKEYDIPRYTSLKKQDLIFAILEARAQSEGYFFGEGV
LEVHPDGFGFLRSLESMLPSSKDIYISNSQIRKFNLNTGDIISGVIRPPKEGERFLPMIK
IEAVNYKDPEFANERVNFENLTACYPDKQFFLETNKDTYSTRLIDLFSPIGKGQRGMIVA
PPKAGKTTILKEIANGIAKNHPDTIRIVLLIDERPEEVTDIKESVNAWVIAAPFDMPPDK
QIKKAELTLEMAKRLVEFGYDVVILMDSLTRLARVYNINVPPSGKLLSGGVDPAALYKPK
HFFGAARNTKEGGSLTIIATSLIETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAI
NIMLSGTRREELLLSNEKLKKLWLLRKMLSSMSEEEGLKLILNKMKETNTNEDFLALIDL
Q
NT seq 1266 nt   +upstreamnt  +downstreamnt
ttgagcaataatgatgcttataacataaaagatttagaaagcatgacaataagagatttg
tacaaactcgctaaagaatatgatattcccagatacacctctttaaaaaaacaggattta
atatttgcaatcttagaagcaagggcccaatcagaaggatacttttttggagaaggtgtt
ttagaagtacaccctgatgggtttggctttttaagaagtctagaaagtatgttaccaagc
tccaaagatatatacatctcaaattctcaaataagaaaattcaacctaaataccggtgat
attatatctggtgtaattagacccccaaaagaaggcgaaagatttttgccaatgataaaa
attgaggcggtaaattataaagacccagagtttgcaaacgaaagagttaattttgaaaat
ttaacagcatgctatcctgacaaacaatttttcttagaaacaaacaaagatacatactct
acaagattaattgatttattttccccaataggcaaaggacaaagaggtatgatagttgct
ccaccaaaagctggaaaaacgactattttaaaagaaattgcaaatggaattgcaaaaaat
catccagatacaataagaatagttcttttaatagatgaaaggccagaagaagtaacagat
ataaaggagtcagttaatgcatgggtaattgctgcaccttttgatatgccacctgataaa
caaattaaaaaagcagaacttacacttgaaatggcaaaaagacttgtggaatttggctac
gatgttgttattttaatggacagtctgacaaggcttgcaagggtgtataatataaatgtt
ccaccaagtggtaaacttctttctggtggtgtagatcctgcagcgctttacaaacccaaa
cacttttttggagcagctcgtaatacaaaagaaggtggaagtttgacaataattgcaact
tctttgatcgaaacggggtcaaaaatggatgaagtaattttcgaagagtttaaaggaact
ggaaatatggaactcgttctctcaagacaacttgctaataaaaggattttccctgcaatc
aatattatgttatctggaacaaggagagaagagttactacttagcaatgaaaaattaaaa
aagttgtggcttttaagaaaaatgttgtcttcaatgagtgaagaagagggattaaagctt
atcctcaataaaatgaaagaaacaaacacaaatgaagattttcttgcattaattgatctt
caatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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