KEGG   Thiomicrospira aerophila: THIAE_05325
Entry
THIAE_05325       CDS       T03589                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
tao  Thiomicrospira aerophila
Pathway
tao03030  DNA replication
tao03410  Base excision repair
tao03420  Nucleotide excision repair
tao03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tao00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    THIAE_05325
   03410 Base excision repair
    THIAE_05325
   03420 Nucleotide excision repair
    THIAE_05325
   03430 Mismatch repair
    THIAE_05325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tao03032]
    THIAE_05325
   03400 DNA repair and recombination proteins [BR:tao03400]
    THIAE_05325
Enzymes [BR:tao01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     THIAE_05325
DNA replication proteins [BR:tao03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     THIAE_05325
DNA repair and recombination proteins [BR:tao03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     THIAE_05325
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     THIAE_05325
   MMR (mismatch excision repair)
    DNA ligase
     THIAE_05325
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      THIAE_05325
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH SnoaL_2 Flavodoxin_NdrI
Other DBs
NCBI-ProteinID: AHF01290
UniProt: W0DRP8
Position
complement(1081452..1083563)
AA seq 703 aa
MKDDVSVLTQQDYLLLCAEIMLHNQAYYRDDRPIISDAQYDQLYQRLLAVEAVHPDWVTE
HSPSQQVGFASHQAFAPITHRMPMLSLNNSFDDQDLSAFYQRAYDRLVQIQHPLVAKSTT
ELAFFAEPKLDGLALSLRYESGRLVTAATRGDGETGEDVTHNVRTIQDIPKRLRGDHWPA
VLEVRGEVFMTKASLASLNEQQLARGDKPFANPRNAAAGSLRQLDAKVTAQRTLNFFCYG
WGEVSEDIPWPKDYPGVMALLAQWGLPINPLGQAVAGLDKMLAYYQQLSQKRPDLAYEID
GIVYKLADLSAQTALGFTAKFPRWAIARKFPAQEVWTDLLGIDIQVGRTGALTPVARLTP
VAVGGVVVSNATLHNLDEIRRKDIRIGDKVIVRRAGDVIPEIVASLADQRVGELAEFSMP
SQCPVCDSAVFKDPDKAVYRCSGGLYCPAQQQRALEHFVSRKAMDIQGLGSKVITQLVAA
GLVSHPDDFYQLTLESLLKLERMAEKSAQNLLDAIAASKQITFARFIFALGIAEVGEVTA
KNLARTFSSIDDLIAADTSQLLAITDIGPVVAEQIQRFFAQAHNREVISGLIAAGIHWPT
SSSNQSLSKQANDSTQQATDDHPFVNKTLVITGSFDEFSRIELAERFESLGAKVTSSVSK
NTDFLIAGDKAGSKLTKAEALGIPIIKADELTRVLGAVDGSTT
NT seq 2112 nt   +upstreamnt  +downstreamnt
atgaaggatgacgtttcggttttaacccaacaggactacctcctactttgtgctgagatt
atgctgcacaatcaagcctactatcgggacgatcgcccgattatcagtgatgcgcaatac
gatcagctttatcaacgccttctcgctgttgaagctgtgcacccagactgggtgacggaa
cattcgccatcgcaacaagttggttttgcttcccatcaggcttttgcacctataacccat
cgcatgcctatgctgtcgttaaataacagttttgatgaccaagatctgagtgccttttat
caacgcgcttatgatcgtctggtccagattcagcatccattagttgctaaatccacaact
gaattggcgttttttgccgaacccaagctcgatggtttggcactaagtttgcgctatgaa
tcagggagattagtcaccgcagcgacccgtggcgatggtgaaacaggtgaggatgtcact
cataatgtgcgcactattcaagatattcccaagcgattgcgaggtgatcactggccagcg
gtattagaagtccgcggtgaagtgtttatgaccaaagcatcgttagcgtcgctcaatgag
caacaactcgccagaggtgataaaccctttgcgaatccacgcaatgcagcagcaggtagt
ttaagacaattagatgcgaaggttaccgcacaacgcactttgaactttttttgctatggc
tggggtgaagtcagtgaggacattccttggccgaaagactaccctggtgtgatggcgtta
ttagcacaatggggtttaccgattaacccgcttggccaggcagtagcaggcctggataag
atgctggcctattatcagcagttatctcagaagcggccagatttggcctatgagattgat
ggcattgtctataaattagcggatttatcggcgcaaacggcactcgggtttaccgcaaaa
tttccgcgctgggccattgcacgcaagtttccggcgcaagaggtgtggactgacttatta
ggcatcgacattcaggttggacgtaccggggcactgaccccggtggcacgacttacgcca
gtggctgtaggtggcgtagtggtgtccaatgccaccttgcataatcttgatgaaattcgg
cgcaaagatattcgcataggggacaaggttatcgtcagacgtgccggtgatgtgattccc
gagatcgtcgcctcacttgctgatcaacgagtgggcgagctagccgaatttagcatgcca
tctcagtgtcctgtatgcgactccgcggtatttaaggatcctgacaaagcggtttatcgc
tgtagcggaggcttgtattgtcctgcgcaacagcagcgcgcactagagcattttgtgtcg
cgtaaagcgatggatatccaaggcttaggcagtaaagtcatcacccaattagtcgcggcc
ggtttggtgtcccatcctgatgatttttatcagctgacattggagagtttattaaaactt
gagcggatggcagaaaaatcagcccagaatctgctggatgcaatagccgcatccaagcaa
atcacctttgcgcgcttcatttttgcgctaggtattgcggaggtaggtgaggtgacggcc
aaaaacctggcgcgtacctttagctcaattgatgatttaattgcggccgataccagccaa
ctactggcgattaccgatattggtcctgtagtggctgagcaaattcagcgattttttgcc
caggcacataatcgtgaagtgattagcggactgatcgcagccggcattcattggcccact
agcagctcaaaccaaagcctaagcaaacaggccaatgactcaacccagcaagcgacagat
gatcatccgtttgttaataagaccctggtgattaccggcagttttgatgaattttctcga
attgagctggcagagcgctttgaaagtttgggcgctaaagtgaccagtagcgtctccaaa
aatacggattttctcattgccggtgataaagccggttcaaaactaaccaaagctgaggcg
ttgggcattcccatcatcaaggctgatgaattaacgcgcgttttaggagcagtagatggt
tcgaccacgtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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