KEGG   Thiobacillus denitrificans: Tbd_2247
Entry
Tbd_2247          CDS       T00275                                 
Name
(GenBank) DNA ligase, ATP-dependent, putative
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
tbd  Thiobacillus denitrificans
Pathway
tbd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tbd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Tbd_2247
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tbd03400]
    Tbd_2247
Enzymes [BR:tbd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Tbd_2247
DNA repair and recombination proteins [BR:tbd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Tbd_2247
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AAZ98200
UniProt: Q3SGP7
Position
2321679..2324219
AA seq 846 aa
MAKRDPLSTYTEKRDFSISPEPVSGGQANEAARSFVVQKHWATRLHYDFRLELDGSMKSW
AVPKGPSLDPADKRMAVHVEDHPIAYNAFEGTIPPRQYGAGKVIIWDKGTWVPLVDPRRG
YEEGHLKFELHGHKLQGRWALVRMKGKGEAKEPWLLIKEKDEHARPAADYSVVDALPDSV
ADKDDAAAVTKAAAPRRRAGETPRPRKARAAKATEKAGAAAVEGAVKSALPATLAPQLAT
LADKPPDDGDGWVYEVKFDGYRMLARIDKTVRLFTRNGNDWSHRLAPLVKAIEAAGLRPG
WLDGEVVVPNAAGVPDFQALQNAFDQARADAIVYYVFDLPFYDGYDLRAAPLVARKALLA
GLLDTPHSDALRLSESFDAAPRDILASACKMGLEGVIAKRRDAPYVSRRSTDWLKLKCTR
RQEFVIGGYTDPRGSRPGLGSLLLGVHDARGELVYAGNVGTGFDHGTLGDLRKKLAAHAR
DTSPFVDATGIAGKPHWVDPKLVAEVSFGEWTKSGRIRHAVFEGLRLDKRAASVVREEPV
AAAAAAPRLPADLKVSHPERVVDKASGTTKLALIAYYARVAPLMMPHLKARPVSLVRAPD
GVGGSLFFQKHVEASQMRGVKTLPRTLDPGHAPLIEVAAAEGLLTAAQMNVIEFHTWNAR
KTRIDKPDRMTFDLDPGEGVGWTTVQESAHLVREFLSQLGLASFLKTSGGKGLHIVVPLK
RLHDWDTVKDFSHAIVRHLARTLPQRFAAKSGPKNRVGKIFIDYLRNGFGATTVAAWSVR
ARPGLGVSVPLEWRELDALTSAAQWTVPNIDSRLEIGNAPWEAYDASSHSLTRAMKTLGH
VPKTPA
NT seq 2541 nt   +upstreamnt  +downstreamnt
atggccaagcgcgacccgctttccacctacaccgagaaacgcgatttttcgatcagcccg
gagccagtgtcgggcggccaggccaatgaggcggcgcgctcgttcgtcgtgcagaaacac
tgggcgacgcgactgcattacgacttccggctcgaactcgacggcagcatgaaaagctgg
gccgtaccgaaggggccgagcctcgaccccgcggacaagcgcatggccgtgcacgtcgag
gaccacccgatcgcctacaacgcgttcgaggggacgatcccgcccaggcaatacggcgcc
ggcaaggtcatcatctgggacaaaggcacctgggttccgctcgtcgatccgcgccgcggc
tacgaggaaggccatctcaaattcgaactccacggtcacaagctgcaggggcggtgggcg
ctcgtgcgcatgaagggtaaaggcgaagccaaggagccctggctcctgatcaaggaaaag
gacgaacatgcgcgccccgccgccgactacagcgtcgtcgacgccctgcccgacagcgtc
gcggacaaggacgacgccgcggccgtgacgaaggccgcggcgccgcggcggcgtgcaggc
gaaacgccgcgcccgcgcaaggcgcgcgcggcgaaggccacggaaaaagcgggcgcggcg
gccgtcgagggcgcggtgaaaagcgcgctgccggcgacgctggccccccagctcgcgacg
ctcgccgacaagccgccggacgacggcgacggctgggtctacgaggtaaagttcgacggc
tatcgcatgctcgcgcgcatcgacaagacggtccgcctgttcacgcgcaacggcaacgac
tggagccacaggctcgcgccgctggtcaaggcgatcgaagcggccgggctgcggcccggc
tggctcgacggcgaggtcgtcgtaccgaacgcggccggcgtgccggacttccaggcgctg
cagaacgccttcgaccaggcgcgcgcggacgccatcgtctactacgtcttcgacctgccg
ttctacgacggttacgacctgcgcgcggcgccgctcgtcgcgcgcaaggcgctgctcgcg
ggcttgctcgacacgccgcacagcgacgcgctgcgcttgagtgaaagcttcgacgcagcg
ccgcgcgacatcctcgcatcagcctgcaagatggggctcgagggcgtgatcgcgaagcgc
cgcgacgcgccctacgtctcgcgccgctcgaccgactggctcaagctcaagtgcacgcgg
cgccaggaattcgtgatcggcggctacaccgatccgcgcggctcccggcccgggctcggc
tcgctgctgctcggcgtgcacgacgcgcgcggcgaactcgtctacgccggcaacgtcggc
accggcttcgaccacggcacgctcggcgatctcaggaaaaaactcgcggcgcacgcgcgc
gacacgagcccgttcgtcgacgcgacgggcatcgcgggcaagccgcactgggtcgacccc
aaacttgtcgccgaggtgtcgttcggcgaatggaccaagagcggccggatccgccacgcg
gtgttcgaggggctgcggctcgacaagcgcgcggccagcgtcgtccgcgaggaacccgtt
gccgcggcggccgccgccccgcgcctgccggccgatctgaaggtctcgcacccggagcgc
gtggtcgacaaggcgagcggcaccaccaagctcgcgctcatcgcctactacgcgcgggtc
gccccgctgatgatgccgcacctgaaggcgcggccggtgtcgctggtgcgcgcgcccgac
ggcgtgggcggatcgctctttttccagaagcacgtcgaggcgtcgcagatgcgcggcgtc
aagacgctgccgcgcacgctcgacccgggtcacgcgccgctcatcgaggtcgccgcggcc
gagggcctgctgaccgcagcgcagatgaacgtgatcgaattccatacctggaacgcgcgc
aagacccggatcgacaagccggaccgcatgaccttcgacctcgatcccggcgagggcgtc
ggctggaccacggtgcaggaatccgcccacctcgtgcgcgaatttctctcccagctcggg
ctggcgtcgtttctcaagaccagcggcggcaagggcctgcacatcgtcgtgccgctcaag
cgcctgcacgactgggatacggtcaaggatttttcgcacgcgatcgtgcgccatctcgcg
aggacgctgccgcaacgctttgccgccaagagcgggccgaaaaaccgggtcggcaagatc
ttcatcgattacctgcgcaacggcttcggcgcgaccacggtcgccgcctggtcggtgcgc
gcacgcccagggctcggcgtctcggtgccactcgaatggcgcgaactcgacgcgctcacg
agcgctgcgcagtggacggtcccgaacatcgactcgcgcctcgaaatcggcaacgcgccg
tgggaggcctacgacgcctcgagccacagcctgacccgggcgatgaagacgctgggccac
gttccgaaaacgccggcatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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