KEGG   Trypanosoma brucei brucei: Tb927.4.4110
Entry
Tb927.4.4110      CDS       T01013                                 
Name
(RefSeq) hypothetical protein, conserved
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
tbr  Trypanosoma brucei brucei
Pathway
tbr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tbr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Tb927.4.4110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tbr03019]
    Tb927.4.4110
Enzymes [BR:tbr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     Tb927.4.4110
Messenger RNA biogenesis [BR:tbr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     Tb927.4.4110
SSDB
Motif
Pfam: CLP1_P CLP1_N Clp1
Other DBs
NCBI-GeneID: 3656946
NCBI-ProteinID: XP_844561
UniProt: Q57Y15
Position
4:complement(1088379..1089917)
AA seq 512 aa
MANTALLEREYALPPMGELCLATASSGGAATVTLLAQVEDGGEEPRAEIFGTELSTGVVV
HLPVARSLAVFSPTGCRLVLTASSAVHQICYGTTCNATRARSVADIHTHLEVQRVKARRT
GADGIGPHVLFVAERRAVGTSTYVRTLINYAVRLGYHPLLLDASVEAPRFGYPGVVSLYA
MQYTIDIENEMAFVPGLHSHQGTKKHEDPALFLHILRQMMRLSTERMARSDRCRVGGIFV
DYGTISRAVVEDAEAWECAEEKPEGRPKVNPLDVLVSTILAAGIDHVFVVGSSWLRFKIA
QRLHQESGAQSEIPQITPSTITCSNGLKVQLFLLDSTECGAVPDDAFFNRQCWLQYFFGS
RTMAVKPTLFTVDASLIRLVTIGRGDTSGTSTFMPMIDDDSDHQDPTVSGQADVALTYVH
PQDVDIKNRVLALSTATEQEELPDGTLQRIPFAVFESRLKRGLLMGFALVESVTAGSVTL
LTNAAGIRKDIGLCFIVTDQQLMAQADVEPPT
NT seq 1539 nt   +upstreamnt  +downstreamnt
atggcaaacacggctctgctggagcgagaatatgcgctaccaccgatgggcgagctgtgc
ttagcgaccgcaagcagcggcggcgctgcaaccgttacgcttcttgctcaagtggaagat
ggcggcgaggaaccgcgtgccgagatattcgggacggagttatcgacaggcgtagttgtc
catctcccggtggctcgttctctcgctgtcttctcccctacaggctgccgattggtgctt
acagcatcctccgctgttcaccagatatgttacggaacgacatgcaatgctacacgggca
cgctcagttgcagacattcatactcacttggaggtgcagcgtgtgaaggcgcgacgaacc
ggcgcagacgggatagggccacatgtactcttcgtggctgagcgccgcgctgttggcaca
agcacgtacgtccgtactttgatcaactacgctgtccgtttgggctaccaccctctgctt
ctagatgcctcggtggaggccccacggtttggttaccctggagtagtctctctgtacgcg
atgcagtatactatagacatcgaaaacgagatggcatttgtccctggcttacactcccat
caagggacaaaaaaacatgaggacccggccctctttttgcacatcttacgtcaaatgatg
cgcttgagtacagagcgtatggcacgaagtgaccggtgccgtgtgggcgggattttcgtc
gactatggaactatcagtcgcgcagtggtggaggatgcggaggcttgggaatgcgccgag
gagaaaccggaaggacgtcccaaagtaaacccactagatgtgcttgtgagtacaatactt
gccgcaggtatcgatcacgtttttgttgttggcagctcctggttacggtttaagatagca
cagcggctgcatcaagagagcggtgcacaatcggaaatcccccaaataactccatctacc
ataacgtgcagtaacgggctgaaggtacagctttttctattggattccactgaatgcggg
gcggtgccggacgatgcattttttaaccgccagtgctggttacaatatttcttcggcagc
cgcacaatggcagtgaagcccacactctttacagtggatgcttctctcattcgtcttgtg
acaattggaagaggtgacacaagtggaacttccactttcatgcccatgatagacgatgat
tcagaccatcaagatcccacagtttccggacaagcggacgtagcgctaacgtacgtgcac
ccacaagatgttgacatcaaaaatcgtgtgctggcgttgagcacagcgactgagcaagag
gagctaccggatggcacactgcagcgcattccattcgccgtatttgagtcccgactgaag
cgtgggttgttgatgggcttcgcgttagttgagtcagtgacagcaggaagtgttacctta
ctgacaaatgctgctggcattcgaaaagacatcggtttgtgttttattgtcactgatcaa
caactcatggcacaggcagatgtggaaccccctacgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (19)   

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