KEGG   Tribolium castaneum (red flour beetle): 656558
Entry
656558            CDS       T01046                                 
Name
(RefSeq) collagen alpha-1(V) chain
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
tca  Tribolium castaneum (red flour beetle)
Pathway
tca04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tca00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    656558
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:tca00536]
    656558
Glycosaminoglycan binding proteins [BR:tca00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   656558
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3
Other DBs
NCBI-GeneID: 656558
NCBI-ProteinID: XP_008199891
Position
LG10:6008356..6020648
AA seq 1627 aa
MPGIFTPFLLWILSTVLALQNEVDLIERANIWNEPNGLMRILGRCLNNSENKDILRTDWA
YRFDENQVVLSTLDLFPQGFPRDFSILTAVRLTPGDIYPLVTVYSESGEEQISVSLGNEI
IFTYESTNVTFNVSLDDGEWHRLAFSIKGDSINMIYECNNTITQALNRSTNDLMTDGITL
IGYQLTDEKFLKGDIQLLTVVPTPDAAYELCNFYAQDCDTVVSLREANFYAKLTNQNSLS
WVVGNNASRGDLDYDEEFVTVLPTVDFVTTGRGFPGLRGFPGPSGPPGLPGAKGDSGRNG
LDGVRGPVGPPGHVFMIPLNLQSNEKGPDSQSENFRQLLSQHMMSMRGIEGPMGLTGVPG
PQGPPGPEGLKGEPGDLGEPGPMGEKGLPGNPGREGRRGRPGRDGERGITGPPGPKGEQG
LLGLPGLPGDKGERGLPGLVGEPGLRGHDGMQGEEGPPGLSGMPGEMGPRGFTGPRGLPG
VPGPPGIPGNEGSAGSKGQAGPPGSPGAPGLVGPPGAVGPPGPHGLLGPPGVMGPHGKPG
IPGLPGADGAPGSPGSPGAMGPKGEQGLAGPAGPVGFPGPRGVKGDEGKRGILGEKGDKG
DRGLEGEKGDLGMKGSVGLVGLPGIPGLEGPEGPKGFDGPRGETGNVGLPGEKGKDGPPG
LPGYPGNLGEKGDKGSSGKIGDNGEKGDRGNPGTPGERGEPGPRGFRGSRGRRGRAGQQG
PKGDTGQPGPPGPQGERGIPGPEGPRGFAGAPGPPGINGKDGHPGSPGERGPPGEPGKPG
MVGPPGVIGPPGPTGEVGPIGEHGPPGLPGVPGEAGLPGEAGKEGAPGSPGPEGKPGPEG
PTGLPGFPGERGLTGLPGIPGLKGDTGPPGAPGVTGDKGQQGEPGKDGPQGPEGRKGPPG
TAGSPGAKGERGEAGPPGPSGRDGLPGLRGLPGGPGPVGPPGEDGDKGDVGPPGEKGFKG
SQGETGPSGSTGPPGSRGEPGPVGPPGDKGPPGEMGRQGSKGEDGPVGLPGPSGPGGLQG
LPGPQGPKGEIGDMGQKGPTGAAGIPGEPGPRGTKGADGLPGLPGPEGPPGIKGDSGTPG
LPGPPGIDGKPGERGPQGQKGEDGKTGLQGPPGPRGPPGTEGPKGSPGPEGFPGPPGESG
LQGAKGEPGKDGEDGRQGETGPPGPPGPVGPMGTPGLPGKTGLDGPAGLQGPSGPPGEKG
DIGEIGPPGPQGMTGPQGLPGPQGPPGLTGAPGVAGENGAPGSPGLTGSPGKTGSPGPAG
QKGDRGRRGPKGHRGEMGLSGIKGDLGEKGNKGDKGPPGPEGRKGETGPEGPIGIKGSDG
PAGPPGMEGPPGPKGVEGQTGPKGEPGPPGPAGPPGPPAEMPLLPPEMLFERTFSRERRN
VEEIISEYEDMNTEAETDDNGKFLEMYNTIYSMRQDLERVKKPIGTRENPVRSCKDLFYG
HPQFPDGWYWIDPNSGMTDDAIYVYCNMTAEGETCVFPDAHSANMPNIPWRQEGGKKDWY
SHLRGGFKITYETVGVVQMTFLRLLYQEAYQNFTFSCINTIAWFNENTQDHKMALKFRGD
NEYEFAHKKTGLKVIQDGCQDGTTKSETIFELRTTKLDRLPIVDFFPLDYGAPNQAFGFT
VGPICLK
NT seq 4884 nt   +upstreamnt  +downstreamnt
atgcccggaattttcacaccattcctcctatggatcctctccaccgtcttagcgctacaa
aacgaagtggatctaatcgagagagctaacatttggaacgaaccaaacggacttatgcgc
attttaggccgatgtttgaacaattccgaaaataaagacattctacgaacggattgggct
tacagatttgacgaaaatcaagtggtcttaagcacacttgatttatttccgcaggggttt
ccccgggatttttccattttgacagctgtcagactcacacctggcgacatctatccgcta
gtcactgtatacagtgaaagcggggaagaacagatttctgtttcactaggaaatgaaatt
attttcacctacgaaagcactaatgtgacctttaacgtatcactagatgatggagaatgg
caccgactagcttttagcatcaaaggcgactcgattaatatgatatatgagtgcaataac
accataacccaggctctaaaccgctcaaccaatgatttaatgacagatggcatcactctg
attggttaccaactgacagacgagaaattcctcaagggtgatattcaactcctgacagtg
gtaccaaccccagacgccgcctacgaattgtgcaacttttatgcacaagattgtgacacg
gttgtaagtcttcgagaggccaatttttacgccaagttaacaaaccaaaattccctaagt
tgggttgttggcaacaatgcaagtcgtggcgatcttgattacgacgaggaatttgttaca
gtgttgccaaccgttgattttgtgacaaccgggcgcggttttccgggtctgaggggtttt
ccgggaccttcgggaccccccggacttccgggtgccaaaggtgactccggaaggaacggt
ttggacggggtgaggggtccggttggcccccctgggcatgtctttatgattccgttaaat
ttgcaaagtaatgaaaaagggccggactcccagtctgagaacttccgccagttgttgtcg
caacatatgatgtcgatgcgtgggattgaaggtccgatgggattaacgggagttcccggt
cctcaaggtcccccaggtcccgagggattaaagggggaacctggggatctgggtgaaccg
ggacctatgggtgaaaaaggccttccgggaaatcccggacgtgaagggagacgtggaaga
ccaggccgtgatggggaacgtgggattacaggccctccgggtcctaaaggggaacaggga
ttattgggattaccgggacttccgggtgataaaggggagagggggctcccgggtttggtc
ggcgaaccgggattacgtggtcacgacgggatgcaaggcgaggaaggtcctccgggactt
tcgggaatgcctggagaaatgggccctcgggggttcaccgggcctaggggattacccgga
gtgccaggcccgcccggaattccgggtaatgaaggatcggcgggttccaaaggccaggcg
ggacctcccggatcacctggagcaccgggattagttggaccccctggagcggtgggtcct
ccaggtcctcacgggttacttggaccaccgggagttatgggaccgcatgggaaacccggg
attccgggattaccgggtgcagatggcgcacccggaagtcccgggagtcccggagcaatg
ggtcctaaaggagagcaaggtttggcgggaccggcgggtcctgtgggttttccgggacca
cgtggtgttaagggggatgaagggaaaagggggattctgggtgaaaaaggggataagggt
gataggggtttggagggggaaaaaggggatttggggatgaagggaagtgtgggtctggtg
ggattacccggaattcccggtttggaaggtcccgaaggacctaagggatttgatggtccg
agaggagaaaccggaaatgttggcttacctggggagaaaggaaaagacggacctccgggt
cttcccggatatcccggaaatctgggtgaaaaaggggataaagggtcgagtggcaaaatt
ggggataatggagagaaaggagatagaggaaatccgggaactccaggtgaacgtggcgaa
ccaggacctcgtggattccggggttcgcgtggtcgccgtggccgtgcaggtcaacaaggt
cccaagggagacaccggccaacctggaccacctggacctcaaggcgaacgaggcatcccg
ggtcctgaaggacctcggggttttgccggagcaccgggtcctcctggaatcaatggaaaa
gacggccatccgggatcacccggagaacgtggacctcccggtgaaccaggaaaacccggc
atggtgggtcctcctggagtaatcggaccaccgggtcctacgggtgaagttggtccaatt
ggggaacatggacctcccggacttccgggggttccgggtgaggctggtctgcctggagaa
gcagggaaagagggagctccaggaagtcctggaccggaggggaaaccaggtcctgaaggc
ccaactggattacctggttttccgggtgaacggggattgacgggattaccgggaattccg
ggtcttaaaggcgatacgggaccgcctggagctccgggagttacgggagataaggggcag
cagggagaaccggggaaggatggaccacaaggtcccgaaggtcggaaaggtcctccagga
acagcgggatcccccggtgctaaaggggaacgtggcgaggctggacctcccggtccgtca
ggacgtgatggtttaccgggactcagagggttacctggaggtccaggtcctgtaggaccc
ccgggtgaagatggcgataagggcgatgttggtccacctggggaaaagggatttaaagga
agtcaaggagaaacggggccgtctggaagtaccggtcctcctggatcaagaggggaacca
ggtcccgtcggacccccaggtgataaaggaccaccaggtgaaatgggacgtcaagggtca
aagggtgaggatggtcccgtgggactcccgggaccttccggacctggaggattacaaggg
ttacccggacctcaaggtcctaaaggagaaataggagatatgggtcagaaaggtcccaca
ggagcagcaggaataccgggagaaccgggtcctagaggaacgaaaggagccgatggttta
cccggattgcctggacccgaaggtcctccgggaattaaaggcgattcgggaactcctgga
ctaccaggacctccagggattgatggaaaaccgggagaaaggggaccacaaggacaaaaa
ggcgaagacggaaaaacggggcttcaagggcctcctggcccgagaggtcccccgggaaca
gaaggtccaaaaggatcaccaggacctgaaggttttcccggccccccgggcgaatcaggc
cttcaaggagctaaaggcgaacctggaaaagacggtgaagacggtcgtcaaggtgaaact
ggacccccaggacccccaggtcctgtaggtcccatgggaacaccgggacttccgggaaaa
acgggacttgacggtcctgcaggacttcaaggaccttcgggacccccgggtgaaaaaggc
gacatcggcgaaatcggccctccaggtcctcaaggaatgacaggacctcaaggcctacct
ggccctcaaggacctcccggattaacaggagctccaggcgttgctggggaaaatggagct
ccaggttctccaggcttaacaggatcacctggaaaaaccggaagtccgggtcctgcagga
cagaagggagaccggggaaggagaggtccgaaaggacaccgaggcgaaatgggattatcg
ggaattaaaggggatttgggcgagaaggggaataaaggggataagggacctccaggtcct
gaaggacgtaaaggagagacaggacctgaaggtcccatcggaattaaaggaagtgatggt
cctgcgggacctccaggaatggaaggaccaccgggacctaaaggagtggaaggtcagacg
ggaccaaagggcgaacctggacccccaggtcctgcaggaccacctggacctccggcggaa
atgccgctacttccaccggaaatgctcttcgaacgaacttttagtcgggaaaggcgcaat
gttgaggaaattatttccgaatatgaagatatgaacacggaagcggaaacagacgataat
ggaaaattcctggaaatgtacaacacaatatattccatgagacaggacttagaaagggtg
aaaaagcctatagggacccgagaaaacccagtccggtcctgcaaagacttgttttacggc
caccctcaattccctgatggatggtactggattgaccccaactcgggtatgaccgacgac
gccatctatgtttattgcaacatgacagctgagggcgaaacgtgcgtttttccggacgcc
cacagcgccaacatgcccaacataccctggagacaagaagggggcaaaaaagattggtac
tcccacctacgcggcggctttaaaataacttatgaaacagtaggcgtcgtccaaatgaca
ttcctccgccttctgtaccaagaagcctaccaaaatttcaccttttcttgcataaacacc
atcgcatggtttaacgaaaacacgcaagaccacaaaatggctcttaaattccgcggcgac
aacgagtacgaatttgcgcacaagaaaaccggtctgaaagttatccaagatggttgccaa
gatggcaccaccaaaagtgagacaattttcgagttacggaccacaaaattggaccgtttg
cccatcgttgacttttttccgcttgactatggcgcccccaaccaagcgtttgggttcaca
gtgggccccatttgcctcaagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (234)   
   KEGG ORTHOLOGY (1)   
   RefGene (230)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (248)   

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