KEGG   Tribolium castaneum (red flour beetle): 657043
Entry
657043            CDS       T01046                                 
Symbol
Lig4
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
tca  Tribolium castaneum (red flour beetle)
Pathway
tca03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    657043 (Lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tca03400]
    657043 (Lig4)
Enzymes [BR:tca01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     657043 (Lig4)
DNA repair and recombination proteins [BR:tca03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     657043 (Lig4)
SSDB
Motif
Pfam: DNA_ligase_A_M RNA_ligase DNA_ligase_A_C DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_IV mRNA_cap_enzyme Flagellin_IN
Other DBs
NCBI-GeneID: 657043
NCBI-ProteinID: XP_968624
Position
LG9:complement(204343..206614)
AA seq 734 aa
LSISAINDFLDQIANRSSDSGLDDLVLQFLLKLSPRNIKWLILIILKDLKLGFGDNSILN
CFHPDGADFFATNSNLRNFCDLIRDPQVRLNELEINVFQAFRPMLSKRCDAANFKKCFPE
SKTFIIENKFDGERFQLHMADGQFRYFSRNGFDYTDTYGASFTAGIFTPKLRPVLGPETK
RVILDGEMMLWNRETRSFGSKGMNLDVKKLGEGGKYQPCFCVFDILLHNDRVLTNQPLFK
RLKCLKSVVKNPVEGTIVVSQYSEASSLGDIVDALNSSVDNNEEGIVVKDTKSVYKCSDR
NSGWFKVKMEYFDDVVHDLDVILMGGCYSSGKLNSFFVGVSSGANTYLSFGRISSGLSDE
QLDLLAEKFQSKGVDFKSFSTESEGKLQFGRDRPDLYIEPHNSCILQIRATELIRTTNDT
VKCPYTLRFPRVLKIRDDKPVDECFSINELLELAGQNKPVIKLNKRHIELSEISAKARPA
KKIKLEVIKSDLLTESGDFLTGKRFYVDSGTQKWGLDDIYHAIKKAGGEISYRVEPNVDV
ILVSKVGKKVAELMKQPNHFDIVHVDWLHRVMEYRELVDYKPGEMFYKGTNFRRDVGSDS
DRFGDSFREEATKESLKCAVRVMQEAGVFLNTNGAVFCGDKPSFGDYVAYFDCFEEINNP
RSKRIYYSLPDEAEFEFYSGTVVKEITAQVNLIIIAENNEDRVSIVSDFLANEGLGTVDI
VSKDFLYSRISSQN
NT seq 2205 nt   +upstreamnt  +downstreamnt
ctgagcattagcgccataaacgacttcctggaccaaatcgcaaaccggtccagcgattcg
ggcttggacgacctcgtcttgcaattcctcctcaaactatcgccacgcaacataaagtgg
ctcattctcatcatcctcaaagacctcaaactcggctttggcgacaactcgatcttgaac
tgcttccacccggacggggccgattttttcgccacgaacagcaacttgaggaacttctgc
gaccttattcgcgacccccaagtcaggctgaacgagctggagataaatgttttccaggcg
ttcagaccgatgctttcaaaacggtgcgatgccgccaacttcaaaaagtgcttccccgag
tcgaaaactttcatcattgagaataagttcgatggtgaaaggtttcaactgcacatggct
gacggccagtttaggtatttctcgcggaacggtttcgattacactgacacgtacggggcg
tctttcaccgcggggattttcaccccgaagttgcgccctgttcttggccctgaaaccaaa
cgggtgattctggacggggagatgatgctctggaacagggaaacgcgcagtttcgggtcc
aaggggatgaacttggatgtgaaaaaattgggggagggcggaaaataccagccttgtttt
tgcgtctttgatattttgttgcacaacgaccgggttttgaccaatcagccgttgtttaag
cggttgaagtgcctcaaaagtgtggtcaaaaacccggtggaaggcactattgttgtgagt
caatacagtgaagccagttctttgggtgatatcgtcgatgctttgaattcgtcggttgat
aataacgaggaagggattgtagttaaagacaccaaatcggtttacaaatgcagcgaccgg
aacagcggttggtttaaggtcaaaatggaatacttcgacgatgttgttcacgatttggac
gtgattttgatggggggttgttacagttcgggcaaactcaattcgttttttgttggggtc
agttcaggggctaacacctacttgtcctttgggagaatctcgtccggtttgagtgacgag
cagctcgaccttttggccgaaaaatttcagtcgaaaggggttgatttcaagtcattttca
accgagagcgagggcaagctccagttcggccgtgaccgccctgacctttacatcgagccc
cacaattcgtgcattttgcaaatcagagccactgaattaatccggaccacgaatgacacg
gtcaagtgtccctacactttacgttttccccgtgttttgaaaatccgggacgacaaaccg
gtcgatgagtgcttctcaataaacgagctcctcgaactcgcgggccagaacaagcccgtt
atcaaactgaacaaaagacacatcgaactctctgaaataagcgccaaggcaagaccggcg
aaaaaaatcaagcttgaggtcatcaagtcggatttgttgaccgaatccggggatttttta
accggaaagcgcttttacgtcgattccgggacccagaagtgggggcttgatgacatctac
cacgcgatcaagaaagccgggggtgagataagctaccgcgtggaaccgaacgttgatgtg
attttggtgtcgaaagttggtaaaaaagtggccgagctgatgaaacaacccaatcatttt
gatatagtccacgttgattggctgcaccgcgttatggaataccgagagttggtggactac
aagccgggggagatgttctacaaagggactaattttcggagagacgttggctcagattcg
gatagatttggcgattcgttccgtgaggaagcgacgaaagagtcgctaaagtgtgcggta
cgggtgatgcaagaagcgggcgtttttttgaacacaaacggggcggttttttgcggcgat
aagccgagttttggtgattatgtcgcgtattttgattgtttcgaagagattaataatccg
cgttccaaacgcatttattattcgcttccagatgaagcggagtttgagttttatagtggt
actgtggttaaagagataacggcgcaagttaatttgataataattgcggaaaataacgag
gatcgtgtctcaattgttagtgattttttggcaaatgaaggactcgggacggttgatatt
gtttcgaaagatttcttgtacagtcgcatttctagtcaaaattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (45)   

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