KEGG   Tribolium castaneum (red flour beetle): 663221
Entry
663221            CDS       T01046                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
tca  Tribolium castaneum (red flour beetle)
Pathway
tca03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tca00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    663221
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tca03019]
    663221
Enzymes [BR:tca01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     663221
Messenger RNA biogenesis [BR:tca03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     663221
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     663221
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 LRR_1
Other DBs
NCBI-GeneID: 663221
NCBI-ProteinID: XP_008201621
Position
LG2:complement(12189698..12204196)
AA seq 626 aa
MTGGYIMPRNSKDSKYENNGSNRRTHTYMSAEDQAAGKKSFWTELEITGTIRNLSSNLFQ
MTHLTALYLKNNSLQRLPPDICQLVNLRNLDLSSNKLRSLPAELGELIQLSHVVGLLKTT
YFVLKFQNLVSKALHPSLFLPNPANPFEHSGVELQLSHNQLRILPYELGKLFNLMVLGLI
GNPLSKDIMNIYAEPNGTQKLLTFMLDNLQVTTPTPPPRPWIPLARPSSNRPTCIFTVMC
YNVLCDKYATRQMYSYCPSWALNWDYRKKGILEEIRHYSADIINLQEVEMEQFYNYFLPE
LKQDGYAGIYSPKSRAKHMAESERKYVDGCAIFYRTSKFTLIKEHLVEFNQLAMANADGL
DHMLNRVMPKDNIGLAALLQTTEAAWENTPADAPFIQQPILVCTAHIHWDPEFCDVKLIQ
TMMLSNELKSILDKSAQALRASENVNADPNSIQLVLCGDFNSLPDSGVIEFLSTGRVSQD
HKDFKDFSYKQCLEKVLSCDKPNEFTHSFKLASAYNDEIMPFTNYTFDFKGIIDYIFYAK
QTMTPLGLLGPISSEWLTQNKVIGCPHPHVFSDHFPLLVELEMVPTVSAPINGIIGHRLK
DTSKDARIFFNRRRNFIVPVSCDVKY
NT seq 1881 nt   +upstreamnt  +downstreamnt
atgacaggcggatatattatgccacgcaattctaaggacagcaagtatgagaacaatggt
tctaatagaagaactcacacctacatgtctgctgaagatcaagcggccggtaaaaagtca
ttttggacagaattggagataacagggactatacggaatttaagttcaaacctatttcaa
atgacccatctaacagcactgtatttaaaaaataattcccttcaaagattaccacctgat
atttgccaactggtcaacctaagaaacctagacctgtcatccaataagctgcgatcgctg
ccagctgaactaggagaacttatacaactcagccatgttgtgggcctgctaaagacaact
tattttgttctcaaatttcaaaacctggtttctaaggccttgcacccttccttgttcctc
ccgaatcctgcgaaccccttcgagcattctggagtggaactgcaattgagtcacaaccaa
ttaaggattctgccgtacgaattgggaaagctgttcaacctgatggtactcggtttaata
ggaaatccgctcagtaaagacatcatgaatatatacgccgaaccaaacggaacgcagaag
cttttgactttcatgttagacaacttacaagtaactacacctacaccacctcctcggcct
tggatccctttggcacggccatcatcaaaccgaccgacatgtattttcactgtgatgtgt
tataatgttttatgtgataaatacgcaacacgacaaatgtacagttactgtccaagttgg
gcattaaattgggactataggaaaaagggtatcctcgaagaaatccggcattacagcgcc
gacatcatcaatctacaggaggtggaaatggagcagttttacaattattttttacccgaa
cttaaacaagacggctacgcgggtatctattcgccgaaatcgcgagcgaagcacatggcg
gaaagtgagagaaaatacgtcgacggttgcgcaattttctaccgaacatcaaaatttacc
ctaatcaaagaacatttagtcgagtttaatcaattggcgatggcgaacgcggacggcttg
gaccacatgctcaacagagtgatgccgaaggacaacatcggcttggcagcgcttttgcaa
acgacggaagcggcgtgggaaaacactcccgccgacgcgcctttcatccagcagccgatc
ctcgtatgcacggcacatatccactgggatcccgagttttgcgacgtgaaactgatccaa
acgatgatgttgagcaacgagctcaagagcatactcgacaagtccgctcaagcgctgaga
gcgtcggagaacgtgaacgcagacccgaacagcatccagctggttctttgtggcgatttc
aactcgctgcccgactcgggcgtgattgagttcttgagcacggggagggtgtcgcaagac
cacaaggatttcaaagactttagttataaacaatgcctggagaaggtcttgagctgtgat
aaacctaatgaatttacacattccttcaagctcgcttctgcctacaatgatgagataatg
ccgttcacaaattacacattcgattttaagggcattatcgattatattttttacgcgaaa
caaacaatgacaccattgggtttgctgggacctatctcgtccgagtggttgacgcaaaat
aaagtcatcggttgcccacatccgcacgtattctccgaccattttccgttgctcgttgaa
cttgaaatggtgccaactgtgtctgcaccaattaatggcattatcggtcacagacttaag
gacacgtcaaaggatgcaaggatcttttttaaccgtcgacggaattttatagtgccagta
agctgtgatgtgaaatattag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (52)   

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