KEGG   Theobroma cacao (cacao): 18592004
Entry
18592004          CDS       T02994                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 4b
  KO
K03129  transcription initiation factor TFIID subunit 4
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    18592004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcc03021]
    18592004
   03036 Chromosome and associated proteins [BR:tcc03036]
    18592004
Transcription machinery [BR:tcc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     18592004
   Coactivators
    SAGA/TFTC/STAGA complex
     18592004
Chromosome and associated proteins [BR:tcc03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     18592004
SSDB
Motif
Pfam: TAF4 RST DUF4513
Other DBs
NCBI-GeneID: 18592004
NCBI-ProteinID: XP_007018536
Position
8:4469451..4476049
AA seq 950 aa
MDPSIVKLLEEDEDESMHSGADVEAFQAALNRDIEGDAATTSQTSGSNTAVLSQGSNPAS
CQSVAQWPSKGQDGNTNFQNQRALQSAQQQQQPSSEMEQKQQGAVVAGSQHHVRQPNDVP
QEINRLPQQQKQPQDDRQQGVAEQVSAQVPQSTGVQTTEKSPIPAREPERTNNQDSESQY
MKLQKMSNQQAGGTEQPNNPMNRGKQVPFAVLLPALLPQLDKDRAMQLHTLYGKLKKNEI
AKDGFVRHMRDIVGDQMLRLAVNKLQVQMSSNQFPLQSQAAARQNTPRMPSVSAGATQFA
GPHSLAQLQQKGPNSPATPSRAPSPAVPMQTNSSYSSTENKAPKSQEMDRQSDSRFGVLG
SQISSFSTTTVNQERDRSSIPVQGLNKQQQQHLNFPQTSFSMHGSSSYHPYSGPSVNASG
SSLKPQPHDSQMRQTALHQSMGSNPVGGPTQAMNVMSGPKFERQNSSNDPNRLQGGSLSH
FSNSSVPWQASSSKETNPGPLSSVTYVKQESVDQGAEHQHKPHLSASQGLPTALGEQGNA
VTTTPKDEPLEKQSSRIGFSTPNSMVPPNSVSPITTQVDSNVPLGSRNPSVPSLAGANSR
TPQKKPSVGQKKPLETLGSSPPPSSKKQKVSGAFLDQSIEQLNDVTAVSGVNLREEEEQL
FSGPKDDSRVSEASRRVVQEEEERLILQKTPLQKKLAEIMAKSGLKNISNDVERCVSLCV
EERMRGLICNLIRLSKQRVDDEKSRHRTLITSDVRQQIMMMNRNAREEWEKKQAEAEKLR
KLNEPEAETAVDGDKEKDDNRVKSVKANKEEDDKMRTTAANVAARAAVGGDDMLSKWQLM
AEQARQKREGGMDAASGSQAGKDVNCRPLSASVKNTKDNQESEKRGPLSPLASGASRKFG
RNQVITPQTRVARTISVKDVIAVLEREPQMSKSTLIYRLYEKIRSEAAAE
NT seq 2853 nt   +upstreamnt  +downstreamnt
atggacccttccatagtaaaactccttgaagaagacgaggacgagtctatgcattctgga
gcagacgtggaggccttccaggctgccttgaatcgagatatcgaaggcgatgccgccact
acttctcagacgtctggttcaaataccgcagttttgtctcaaggaagcaatccagcttcc
tgtcagtcagttgcacaatggccgtccaaggggcaagatgggaacaccaactttcaaaat
caacgggcccttcaaagtgcacagcaacaacagcagccttcttctgaaatggagcaaaag
caacagggagctgttgttgctgggagtcagcatcacgtacgacagccaaatgatgttccc
caagagattaatcgtttaccacaacaacaaaaacaaccccaagatgatcgtcaacaagga
gtagctgaacaagtttctgcccaagttcctcaatcgactggggttcagactactgaaaaa
agtcctatcccagcacgtgaaccagagagaaccaataatcaagacagtgaatcacaatat
atgaaattacagaagatgagtaatcagcaggctggtgggacagagcagccaaataatcct
atgaatcgaggaaagcaagtaccgtttgctgttttgttgcctgccttactgccccaactt
gataaagacagagccatgcagcttcataccttgtatggtaaactaaagaaaaatgaaatt
gcaaaagatgggtttgtccgacacatgagagatattgtaggagaccagatgctgaggttg
gcagtaaacaagttacaagtgcagatgagttccaaccaattcccattacagtcccaggct
gcagcacggcagaatactccgaggatgccatctgttagtgctggtgccacacagttcgct
ggtccacattcattagctcagctgcagcaaaaaggccctaattctcctgccactccatct
cgtgctccctctccagcagtccccatgcagacaaattcaagttattcatccactgaaaac
aaggctccaaaatctcaagagatggaccgccaatcagattctcgctttggagtgctagga
agccaaatttcttcctttagtacaaccaccgtgaatcaagaaagagaccgctcttcaatc
ccagtacaaggacttaacaagcagcaacaacaacatttgaatttcccgcaaacttctttt
tccatgcatgggagcagtagttatcacccatactctgggccaagtgttaatgcttcagga
tcctctttaaagccgcaacctcatgattcacaaatgaggcaaactgcacttcatcaaagc
atgggatcaaatcctgtaggaggaccaacccaggccatgaacgtgatgagtggacctaag
tttgagaggcaaaactctagtaatgacccaaataggttgcagggtggttctctttctcac
ttttcaaatagttcagttccttggcaagcgtcatcaagtaaggagacaaatcctggccct
ttgtcatcagtgacatatgtgaaacaggaatctgttgatcaaggtgctgagcaccagcac
aaacctcatttgtctgcatcccagggattgcctactgcactaggtgaacagggaaatgca
gttacaactactccaaaggatgagcctttagagaagcagtcttctagaattggcttctca
acgcctaacagtatggtgcctcctaattcagtttctcccattactacacaagtggattct
aatgttccgttgggctctcggaatccctctgtgccctctttggctggggccaattcaaga
acacctcaaaaaaagccttctgttggccagaagaaaccacttgaaactcttggttcatca
ccaccaccatcaagtaagaagcaaaaagtatctggagcctttttggatcagagcattgaa
caactaaatgatgtcactgctgtcagtggagtcaatctcagggaagaggaggagcaacta
ttttctggccccaaagatgacagtcgagtttcagaagcatctagaagggttgtgcaagag
gaagaagaaagactgattttgcaaaaaactccgttgcagaagaaattggctgaaattatg
gccaaaagtggtttgaagaatataagcaatgatgttgagcgatgcgtgtccctgtgtgtg
gaggaaagaatgcgtggactcatatgcaatttaatcagactgtcgaaacagcgggttgat
gatgagaagtctaggcaccggacactcatcacctcagatgttcggcaacaaattatgatg
atgaatcggaacgctagggaagaatgggagaaaaagcaggctgaagcagagaagctcagg
aaacttaatgaacctgaggctgagactgctgttgatggtgacaaggagaaagatgacaat
agagtaaaatcagttaaggcgaacaaggaggaggatgacaagatgaggaccactgctgca
aatgttgctgcacgggctgctgttggaggggatgacatgctgtcaaaatggcaacttatg
gctgagcaagcccgccagaaacgtgaggggggaatggatgcagcatctggttctcaagca
ggtaaagatgtgaactgcaggcctctatctgcatctgtaaaaaatacaaaggacaatcaa
gaatcagaaaagaggggcccactcagtcctcttgcatctggggcaagtaggaaatttggc
aggaaccaagttatcacgccccaaactagagtggctcgtactatttctgttaaggatgtg
attgcagttctggaaagagagccccagatgtctaagtctacacttatttatcgcttgtat
gaaaaaatccgctccgaggctgcagctgagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (24)   

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