KEGG   Theobroma cacao (cacao): 18592602
Entry
18592602          CDS       T02994                                 
Name
(RefSeq) sm-like protein LSM3B
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03018  RNA degradation
tcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18592602
  09123 Folding, sorting and degradation
   03018 RNA degradation
    18592602
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcc03019]
    18592602
   03041 Spliceosome [BR:tcc03041]
    18592602
Messenger RNA biogenesis [BR:tcc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     18592602
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     18592602
Spliceosome [BR:tcc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    18592602
 Complex C
  U2 snRNP components
    18592602
SSDB
Motif
Pfam: LSM TIG_SUH Glutaredoxin CATRA-C
Other DBs
NCBI-GeneID: 18592602
NCBI-ProteinID: XP_007019479
UniProt: A0A061FQC9
Position
8:complement(10870117..10872591)
AA seq 97 aa
MASEDESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA
NT seq 294 nt   +upstreamnt  +downstreamnt
atggcaagcgaggacgagagcgcggtgaaggagcctttggatctgataaggctcagcctc
gacgagcgtatttacgtcaagctccgttctgatcgtgagctccgtggcaagctccatgct
tatgatcagcatttgaatatgattctaggggatgttgaagagatcgttaccacggttgaa
atagatgatgaaacctatgaagagattgttcggactacaaggcgcacggttccatttctc
tttgttagaggagatggagtcatactggtttctccacctcttcggactgcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (36)   

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