KEGG   Theobroma cacao (cacao): 18598419
Entry
18598419          CDS       T02994                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:3.6.4.13]
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    18598419
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tcc03019]
    18598419
Enzymes [BR:tcc01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     18598419
Messenger RNA biogenesis [BR:tcc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     18598419
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C HA2_N DEAD AAA_19 AAA_22 T2SSE nSTAND3 Rad17 ATPase AAA_14 DUF5128 ABC_tran BEX
Other DBs
NCBI-GeneID: 18598419
NCBI-ProteinID: XP_017977486
Position
5:complement(9380771..9389577)
AA seq 1037 aa
MSLRLLSAHNSLTLLFSKRLFLLPTPLISSFPPPQISSFAMSHRPNYQGGRRGGGGPNSG
RGGGRRGGGGGGGSGGPGGEQRWWDPVWRAERLRQKAAEMEVLDEGEWWDKINQMKKGEE
QEMIIRRNFSRSDQQILSDMAYQLGLYFHAYNKGKALVVSKVPLPNYRADLDERHGSTQK
EIRMSTETERRVGNLLASSRDARSADDSGVASSRGATKPLPDVKRTDSVSTIGTDSAKEK
FSAELKQKQENLKASDRVKVMRSFREKLPAFKVKAEFLKAVTENQVLVISGGTGCGKTTQ
LSQFILEEEISCLRGADCNIICTQPRRISAISVASRISLERGESLGETVGYQIRLESKRS
AQTRLLFCTAGVLLRQLVQDPDLNGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRL
VLMSATINADLFSKYFGNAPTIHIPWLTFPVAELFLEDVLQQTRYNIKSEFDNFQGNSQR
RRKELDLKQDNLTALFEDVDIDSHYKNYSVSTRHSLEAWSGSQIDLGLVEAAIEYICRHE
GDGAILVFLTGWDDISKLLDKIKVNSFLGDLSKFLVLPLHGSMPTINQREIFDRPPPNKR
KIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGR
VQPGVCYRLYPKLIHDAMLDYQLPEILRTPLQELCLHIKSLQLGTVGSFLAKALQPPDPL
SVQNAIELLKTIGALDDAEELTPLGRHLCTLPLDPNIGKMLLMGAIFQCLNPALTIASAL
AHRDPFVLPIHRKEEADAAKRSFAGDSCSDHIALLKAFGGYKDAKSNGRERAFCWEYYLS
PVTLQMMEDMRNQFIDLLSDIGFVDKSRGASAYNKYSHDSEMVCAILCAGLYPNVVQCKR
RGKRTAFYTKEVGKVDIHPASVNAGVHHFPLPYMVYSEKVKTTSIFIRDSTNISDYALLL
FGGNLIPSKTGEGIEMLGGYLHFSASKSVLDLIQKLRGELGKLLNRKVEEPGFDISVEGK
GVVSAVVELLHSQNVRY
NT seq 3114 nt   +upstreamnt  +downstreamnt
atgtccctgcgcttgcttagtgctcataatagcctcactctgctcttttccaaacgcctc
tttctcttgcctacgccgctgatctcttcatttcccccacctcagatttcctccttcgcc
atgtctcatcgacctaactaccaaggcggccgtcgaggaggcggcggtcccaactccgga
cgcggagggggacgccgaggaggcggtggtggaggtggaagcggaggacctggcggtgag
cagcgctggtgggaccccgtttggcgtgctgagcgcctccgtcaaaaagcagctgagatg
gaagttcttgatgagggcgagtggtgggataagataaatcaaatgaaaaaaggagaggag
caagagatgataattaggcgaaatttcagccgttcggaccagcaaattctctctgatatg
gcttaccaattaggtctttacttccatgcatataacaaagggaaggctcttgtggttagt
aaagttcctttgccaaattatcgggcagatcttgatgaacgtcatggatccacacagaaa
gagattcgaatgtctacagaaactgagaggcgagttggaaatcttttggctagctcaagg
gacgcacggtctgctgatgattctggtgtagcatccagtaggggagctacaaaaccattg
cctgatgtgaaaagaactgattcagtttctacaattggaacagattctgccaaggaaaaa
ttcagtgctgaactcaagcaaaagcaggaaaatttgaaggcaagtgatagggtgaaggtg
atgcggtctttccgagaaaagctacctgcattcaaagtgaaagctgagtttttgaaagct
gttactgaaaatcaggttctagtgatttcaggaggaacgggctgtggtaaaacaacacag
ctttctcaatttattttagaagaggagatatcatgtctgcgaggtgctgattgtaacata
atatgtactcagccgcgtcgtatatctgccatatcagttgcatctagaatatccttggaa
aggggagagagtcttggtgaaacagttggttatcagattcgcctagaatcaaagcgctct
gctcaaacacgactcttgttttgcacagctggagtgttactcagacagttggttcaggac
cctgatttaaatggtgtgagccatttgctagtggatgaaattcatgaaagaggcatgaat
gaggactttctgttaataattttgcgtgaccttcttcctcggcgtccagacttgcgtctt
gttttgatgagtgctaccatcaatgctgatttgttctccaaatactttggaaatgctcca
actattcacataccgtggttgacttttcctgtggcagagttatttctggaggatgtgctg
cagcaaactcgttataatatcaaatcagagtttgacaactttcagggcaattcacaaaga
agaaggaaagagctggatttgaagcaagataatttaactgcactgtttgaggatgttgac
attgattctcactataagaattacagcgtatctactagacattcacttgaagcatggtca
ggttcacagattgatttgggtctggtggaggctgcaattgaatatatttgccgccatgaa
ggtgatggagcgattcttgtattcctcacaggctgggatgacatttctaagctccttgac
aagattaaagtaaacagctttcttggggatcttagcaagtttctggttcttcctctgcat
ggttcaatgcctaccattaatcagcgtgaaatatttgaccgtcctccccctaacaagcga
aaaattgtcctggcaacaaatattgctgaaagtagcatcaccatagatgatgttgtctat
gttatagactgtggaaaggcgaaggaaacaagttatgatgctcttaacaagctggcatgt
ctgttaccatcgtggatttcaaaggcttcagcacatcagagacggggccgtgctggccgt
gtgcaacctggagtttgctatagactgtacccaaaattaatccatgatgcaatgcttgac
tatcaattacctgaaattctccgaacaccattgcaagagctatgccttcatatcaaaagc
ttgcagcttggaactgtgggatcatttttggcaaaggcacttcagccaccagatcctctt
tctgttcagaatgcaattgagcttcttaaaacaattggagctttggatgatgcagaggag
cttactcctctgggtcgccatctttgcactctacctttggacccaaacataggaaagatg
cttctaatgggggctatttttcaatgcctgaatccagctttgacaattgcatctgctctt
gcacatcgtgacccgtttgtccttccaatacataggaaagaggaagctgatgcggcaaaa
agatcctttgctggtgattcttgcagtgaccacatagcacttcttaaagcttttggggga
tataaagatgcaaaaagtaatggaagagaaagagcattttgttgggaatattatttatcc
ccggtgaccttgcagatgatggaggatatgagaaatcagtttattgatctgttatcagac
ataggctttgtggacaaatcacggggtgctagtgcttacaacaaatacagccatgattcg
gagatggtatgcgcaatcctttgtgctgggctttacccaaatgttgttcaatgcaaaaga
aggggaaagcgtacagcattctacactaaagaagttgggaaagttgatatccatcctgca
tctgttaatgcaggcgttcatcacttccctctgccttacatggtttacagtgaaaaggtc
aaaacaaccagcatttttatccgtgactcaacaaacatatcagattatgctttgcttctg
tttggtggtaatcttattcctagcaaaactggagagggtattgagatgctcggagggtac
cttcatttttctgcatcaaagagtgtattagacttgatacagaaactgcgtggggaactt
ggcaagcttttgaatagaaaggttgaagaaccaggatttgatatttctgtggaaggaaaa
ggagtggtgtctgctgtggttgagttattgcacagtcaaaatgtacggtactaa

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