KEGG   Theobroma cacao (cacao): 18601846
Entry
18601846          CDS       T02994                                 
Name
(RefSeq) DNA repair protein RAD4
  KO
K10838  xeroderma pigmentosum group C-complementing protein
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    18601846
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tcc03400]
    18601846
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      18601846
SSDB
Motif
Pfam: BHD_3 Rad4 BHD_1 BHD_2 Transglut_core M60-like_N
Other DBs
NCBI-GeneID: 18601846
NCBI-ProteinID: XP_007032988
Position
4:19258571..19266943
AA seq 974 aa
MKVTCESDNGNPSGSIHDAGTLAGISQEGVNKLLRRANRRGSSRKEEKNEYLQKNDLKTN
EQVVHTMIVQNASMAEGCSRNAVGSSQLEVDVGSYVDNLFDDSEDMNDSDWEDGSIPKLD
PVDNSPKERMKGLTIEFDEPSGSAGRKPVRRASAEDKEIAELVHKVHLLCLLARGRLIDN
ACDDPLIQASLLSLVPTHLSKISGVSNITSNALSPLVTWFHNNFHVRSLVRAERSFHTAL
AFALETREGTPEEIAALSVALFRALKFTARFVSILDVASLKPEADKCEPSSQEANRVGGG
IFSTSTLMVANLKEVSSSSSPVKSFSCSEKDGHCENSLRSSCKSKGGCPTSNDTQSRYST
AVDEMTDRTSNLFACQAQLDTYGQCAPTKSQGLKRKGDLEFEMQLAMAISATTVGTLENS
AGSLDVSNFNGNNSLDASTPSKRWKEIHRVESATSSQGLSTALGSRKVGSPLFWAEVYCG
GENLTGKWVHVDALNAIIDGEQKVEDAAAACKTALRYVVAFAGRGAKDVTRRYCMKWYKI
APKRVNSIWWDAVLAPLRELESGATGGTINMEKLHNNASNEQEKIKASGMSEYPGTDSPS
NHVILPEKSGQEAFKEYGSKSEVESSTKHSLVATRNSLEDMELETRALTEPLPTNQQAYK
NHALYALERWLTKCQILHPRGPILGYCSGHPVYPRTCVQTLKPRERWLREGLQVKGNEIP
AKVLKRSAKLKKVQVSEEDDYEEIDSKGTIELYGKWQLEPLCLPHAVDGIVPKNERGQVD
VWSEKCLPPGTVHLRLPRVFSVAKRLEIDYAPAMVGFEFRNGRAAPIFDGIVVCSEFKDA
ILEAYAEEEERRVAEEKKRNEAQAISRWYQLLSSIITRQKLKSYYGDGSSSQASRNIQDK
NNEINAPDESSKDDRQSTGLWKGDGEDTLCNIPSGTLVEDHEHVFLRENESFDAENSVRT
KRCHCGFSIQVEEL
NT seq 2925 nt   +upstreamnt  +downstreamnt
atgaaagttacatgtgaatcagataatggaaatccttcggggtcaattcatgatgctgga
acacttgctgggatatcacaggagggagtgaacaaacttctaagacgtgccaatagacgt
ggctcttcaaggaaggaggaaaagaatgaatatctccagaagaatgacctaaaaacaaat
gaacaagttgtacatacaatgattgtgcagaatgcttcaatggctgaaggttgtagtaga
aatgcagtaggaagttctcaattagaagttgatgtgggaagttatgtagacaatcttttc
gatgattcggaagacatgaatgactcggattgggaagatggttccattcccaaattggat
cctgtagacaattctccaaaggagcgcatgaagggtttaactattgaatttgatgaacca
tcaggttctgctggaaggaagcctgttcgtcgagcttctgctgaagataaggaaatagct
gagcttgtgcacaaggttcatttgctttgtttactggccaggggcagattaatcgacaat
gcttgtgatgatccccttattcaggcatctttactttctcttgtcccgacacatttatca
aagatatcaggggtctcaaatatcacttcaaatgctttgtctcctctcgtcacttggttc
cataataattttcatgttagaagcttggttcgtgcagaaagatcatttcatactgctttg
gcctttgctcttgaaactcgtgaagggactccagaagagattgcagcattgtctgtggca
ttatttagagctttgaagtttactgcccggtttgtgtccatcttggatgttgcttcctta
aaacctgaggctgataaatgtgaaccttcgagtcaagaggcaaacagagtgggtggaggg
atatttagtacttcaacactgatggtggctaatctgaaagaagtttctagctcttcatct
ccagttaaatcattctcatgcagtgagaaagatggtcactgtgaaaattctttgaggagt
tcatgcaaaagtaagggtggctgcccaacaagcaatgacactcaatccagatattctact
gctgtagatgaaatgactgatagaacatcaaacttatttgcctgtcaggcgcagttggat
acatatggacaatgtgctcctacaaaatctcaggggttgaagaggaaaggggatcttgag
ttcgagatgcagctggcaatggctatctctgctactactgttgggactcttgaaaacagt
gctgggtcattggatgttagtaattttaatggtaataattcattagatgcatctactcct
tctaaaagatggaaagagatccatagagtagaatctgctactagctcccaaggactttct
actgcacttggatcaagaaaagtaggatctccattgttttgggcagaagtgtactgtggt
ggggagaacttgacggggaagtgggtgcatgtcgatgctttgaatgcaattatagatgga
gagcagaaagtagaagatgcagctgcggcatgtaaaacagcattgagatatgtagttgct
tttgcaggtcgtggggctaaagatgtgacccgcaggtattgcatgaagtggtacaaaata
gcaccaaaacgagttaattcaatttggtgggatgcagtgttggcacctttgagggagtta
gagtcaggagcaactgggggtacgattaatatggaaaagctccataataatgcttcaaat
gagcaggagaaaattaaagcatctggaatgtctgaatatccaggtacagatagtccttca
aaccatgttatcttacctgagaagtcaggccaagaagcttttaaagagtatgggagtaag
agtgaagttgaatcttctacaaagcattccttggttgctaccaggaactctcttgaagat
atggaattggagactagggcactaactgagcctcttcccactaatcagcaggcctacaaa
aatcatgcattgtatgcactggaaagatggcttacaaagtgtcagattctacatccaaga
ggtcccattcttggttactgctctggtcatccagtatatcctcgcacttgtgtgcaaact
ctcaagccaagagaaagatggctgcgtgaagggctgcaggttaaaggcaatgagattcct
gcaaaggtgttgaaacgttctgcaaaactaaaaaaagtacaagtttctgaagaagatgac
tatgaggagattgattctaaaggaactattgaactttatgggaagtggcagctggagcca
ctgtgtctgcctcatgctgttgatggaattgtgccaaagaatgagcgtggtcaagttgat
gtgtggtctgagaagtgccttccaccggggactgttcacttaaggttgccaagggtattt
tctgttgccaagaggctggaaattgattatgcacctgccatggttggttttgagtttaga
aatggtcgtgcagctcccatctttgatggcattgtggtgtgcagtgagttcaaggatgca
atattagaggcttatgcagaagaagaagagagaagagtggctgaagagaagaaacggaat
gaagcacaagctatctcaagatggtatcaacttctctcgtccattataaccagacaaaag
ttgaagagctattatggagatgggtcatcatcacaagcatcccgaaatatacaagataag
aataatgagataaatgctccggatgaaagcagtaaggatgacaggcaatctactggcctt
tggaaaggagatggagaggatactttgtgtaacattccatcaggaacattagtggaagac
catgaacatgtatttttaagggagaatgagagttttgatgctgagaactcagtccgaacg
aagagatgtcactgtggattttcaatccaagtggaagaattatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (6)   
   Pfam (6)   
All databases (34)   

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