KEGG   Theobroma cacao (cacao): 18606560
Entry
18606560          CDS       T02994                                 
Name
(RefSeq) DNA repair helicase XPB1
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03022  Basal transcription factors
tcc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    18606560
  09124 Replication and repair
   03420 Nucleotide excision repair
    18606560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcc03021]
    18606560
   03400 DNA repair and recombination proteins [BR:tcc03400]
    18606560
Enzymes [BR:tcc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     18606560
Transcription machinery [BR:tcc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     18606560
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     18606560
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom
Other DBs
NCBI-GeneID: 18606560
NCBI-ProteinID: XP_007040301
UniProt: A0A061G6I7
Position
3:34320691..34327270
AA seq 771 aa
MGHGEKGRPTKKLKFAAKDDHRSSTVEDEYSFYPDEGDDASRDGENEGKKRDFSKLELKP
DHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV
GLETETIISVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLKKLL
QDDVIARARIASESAHGSDGFTISKAAGEIGTGHDGLLNEAELAAATEEKETHAFEIDPA
QVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRA
RSGIIVLPCGAGKSLVGVSAASRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFT
SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR
KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC
PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHERERGDKIIVFADNLFALTE
YAMKLRKPMIYGATSHLERTKILQAFKTSRDVNTIFLSKVGDNSIDIPEANVIIQISSHA
GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG
YSFKVITSLPPPDAGADLSYYHLDEQLALLGKVLTAGDDAVGLEQLEEDADDIALHKARR
STGSMSAMSGANGMVYMEYSTGKHKYPGQGQIKSKPKDPSKRHYLFKRRYG
NT seq 2316 nt   +upstreamnt  +downstreamnt
atgggacatggtgaaaagggtcgacctaccaagaagcttaaatttgctgccaaggatgat
cacaggagctcaactgttgaagatgaatattcgttttatcctgatgaaggcgatgacgcc
tctcgtgatggtgaaaacgaaggaaagaagagagattttagcaaattagaactaaaaccg
gatcacgcgaatcgcccattatgggcttgtgctgatgggcgtatatttttggaaactttt
tcccctttatacaaacaagcttatgattttctcattgccatagctgaacccgtttgcagg
ccagagtcaatgcacgagtataatctaacaccgcattccttgtatgctgcggtgtctgtg
gggttggaaactgaaactattatttctgtattgaacaagttgtccaagactaagcttcct
aaagaaatgattgatttcatacatgcttctactgctaattatggcaaagtgaagcttgtg
cttaagaaaaatcgttactttatcgaatccccatttccagaggtactgaagaaactgctc
caagatgacgttatagctcgagcaaggattgcttctgagagtgcacatggaagtgatgga
tttacaatcagcaaagctgcgggtgaaattggaactggtcatgatggactgctaaatgaa
gcagagttggcagctgctactgaagaaaaagaaacccatgcatttgaaattgaccctgct
caggttgaaaatgtaaagcaacgatgcttgccaaatgctttaaactatccaatgttagag
gagtatgatttcagaaatgatacggtgaacccagaccttgacatggaactgaagcctcat
gcacagccacggccatatcaggaaaagagtcttagcaaaatgtttggaaatggtagagcc
agatctggcattattgtgctaccttgtggcgctggaaagtctctagttggtgtttctgca
gctagccgaataaagaagagttgcctttgtttagcaacaaatgcagtttcagtggatcag
tgggcctttcaatttaagctctggtcaaccatacgggatgatcaaatttgtcgttttaca
tctgacagcaaagaaagattccgtggcaatgctggagtggttgtgacaacatataacatg
gtagcctttggtggaaaacggtctgaagaatctgaaaagatcattgaagagataagaaac
agagaatggggactgttgcttatggatgaggtgcatgtcgtccctgctcacatgtttagg
aaagtcatcagtcttaccaaatcccactgcaaactggggcttactgccacacttgtgaga
gaggatgaaagaattacagatctgaacttccttattggtcccaaattgtatgaagcaaac
tggctggatctagtaaaaggaggatttatagcaaatgttcagtgcgctgaagtatggtgc
ccaatgacaaaggaattttttgctgaatatttgaagaaagaaaattccaagaagaaacag
gcactttatgtgatgaatcctaataagttcagggcatgtgagtttctcataaggttccat
gaacgtgagcgtggtgataagataattgtctttgctgacaatctttttgcactcaccgag
tatgcaatgaaactgcgaaagccaatgatctatggtgctaccagccatctcgagaggaca
aaaattctccaggcattcaaaactagtcgtgatgtgaacactattttcctctcaaaggtg
ggtgataattcaatagatattcctgaggcaaatgtgatcattcagatttcatcacatgct
ggttcaagacgtcaagaagcccagcgattgggacgtattcttagggcaaagggtaaactt
gaagataggatggcaggtggtaaagaggaatacaatgcatttttctattcccttgtttct
acagatacacaagaaatgtactactcaactaaaaggcagcagtttctaattgatcaaggt
tacagctttaaggtgataacaagcttgcctccacctgatgctggtgctgatttgagttac
taccatcttgatgagcaattggcccttctagggaaggttttgaccgctggtgacgatgca
gttggtttagagcagttagaagaagatgcagatgatatagcgcttcataaagctcgtcgc
tctacgggatccatgagtgcaatgtcaggcgcaaatggaatggtttacatggaatacagc
actggaaagcacaagtatcctgggcagggccagattaaaagtaagcccaaggatccatcc
aagcggcattatttgttcaagagacgctatggttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (30)   

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