KEGG   Theobroma cacao (cacao): 18607075
Entry
18607075          CDS       T02994                                 
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03420  Nucleotide excision repair
tcc04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    18607075
  09124 Replication and repair
   03420 Nucleotide excision repair
    18607075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tcc04121]
    18607075
   03400 DNA repair and recombination proteins [BR:tcc03400]
    18607075
Ubiquitin system [BR:tcc04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     18607075
DNA repair and recombination proteins [BR:tcc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      18607075
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      18607075
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 18607075
NCBI-ProteinID: XP_007041119
UniProt: A0A061DW67
Position
2:636023..644459
AA seq 1088 aa
MSVWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG
RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAETSELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVL
YQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC
SANAFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAFVYIGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS
FISETRILAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSSSVRLVSSISRELR
HEWNAPPGYSVNVATANATQVLLATGGGHLVYLEIGDGTLTQVKHVQLEYEISCLDINPI
GENSNYSQLAAVGMWTDISVRIFSLPDLNLITKEQLGGEIIPRSVLLCSFEGISYLLCAL
GDGHLLNFQLNMSSGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICH
QEQSRTFAICSLKNQPSADESEMHFIRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDDP
NVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLSAFNGKLLAAIN
QKIQLYKWMLREDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA
IEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLG
EFVNRFCHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYAFLEKLQSNLRKVI
KGVGGLSHEQWRSFNNEKKTVEAKNFLDGDLIESFLDLSRGKMEEISKAMSVSVEELSKR
VEELTRLH
NT seq 3267 nt   +upstreamnt  +downstreamnt
atgagtgtatggaactacgtggtgacggcgcacaagcctaccaacgttactcactcttgc
gtcggcaacttcaccagccctcaagagctcaatctcatcattgcgaaatgtactcggatt
gaaatccatttgcttactcctcaaggattgcagccgatgttagatgtgccaatatatgga
agaattgcaacacttgaacttttccgtccacacggtgaagctcaggattttctatttatt
gcaacagagcgatacaagttctgtgttcttcaatgggatgctgagacatccgagcttatt
acaagagcaatgggggatgtttcagaccgtattggtcgacccacagacaatggacagatt
ggcataatagatcctgattgtaggttaattggactccatctatatgatgggctttttaag
gttattccttttgataataaagggcaactcaaagaagcatttaatataaggcttgaggaa
cttcaagttttggacatcaagtttctatatggttgctcaaagcctacaatcgtagtttta
taccaggacaataaagatgcacgtcacgttaaaacatatgaggttgctctaaaggagaag
gactttgtcgagggaccatggtcccaaaacaatcttgacaatggagctgatttgctcata
cctgtacccccacctctctgtggtgtccttattattggagaagaaacaattgtctattgc
agtgcgaatgcattcaaagcaatcccaatcagaccttcaattacaaaagcctatggaaga
gttgatgctgatggctctaggtatttgcttggcgatcatgctggccttcttcacctgctt
gtcataacccatgagaaagaaaaggttactgggctcaaaatcgaactcttgggggaaact
tccattgcatcgacaatatcatatcttgataacgcatttgtctatattggctcaagttat
ggagattcacagctgataaagttaaatctacaacctgatgcaaaaggttcatatgtagaa
gttttggagaggtatgtcaatttggggcctattgttgacttttgtgtggttgaccttgag
aggcaagggcagggtcaagttgtaacttgctctggagcttataaggatggttcccttcgc
atagttcgaaatggaataggaatcaatgaacaggcctcagtagaacttcaaggtatcaaa
ggaatgtggtcattgagatcctctacagatgatccatttgacacgttcctggttgttagt
tttattagtgagacgcgtattttggcaatgaatcttgaggatgagttggaagaaacagag
attgagggatttaattctcaagtgcagacattgttctgccatgatgctgtttacaatcaa
cttgtacaggtcacttcaagctctgtaaggcttgtgagttcaatatctagagagctacgg
catgaatggaatgctccacctgggtattcagtcaatgttgccactgctaatgccacccag
gttttactcgcaacagggggtggtcatttggtttatttggaaattggtgatggcacattg
acacaagtaaaacatgtgcagctggagtatgaaatctcatgtcttgacattaaccccatc
ggtgagaactctaactacagtcagctggctgcagttggaatgtggacagatataagtgtg
aggatattttcactccctgacctgaatctcatcacaaaggagcaattgggaggagagatt
attcctcgttctgttcttctttgctcctttgaagggatctcttacttgttgtgtgccctt
ggagatggtcatcttctaaattttcaattgaacatgagtagtggtgagttaacagatagg
aaaaaggtttctcttgggacccagcccataacgcttcgtactttctcctctaagaatacc
acccatgtatttgccgcatctgataggccaactgtcatttatagtagtaacaagaaacta
ctctacagcaatgtcaatctgaaggaagtcagtcatatgtgcccttttaactctgctgct
tttccagatagccttgccattgcgaaagaaggtgaacttactattggcactattgatgat
atccagaagcttcacattcgctctatcccacttggggagcatgctcgtcgcatctgccat
caggaacagtctcggacctttgcaatatgtagtttgaaaaaccagcctagtgctgacgaa
tctgaaatgcattttatccgcctgttagatgatcaaacctttgagttcatttcgacctac
cctcttgatacttttgagtatggttgctccatactgagctgttcattctcagatgatcct
aatgtatattattgtgtggggactgcatatgttttgccagaagaaaatgagccgactaag
ggccgtatattggttttcattgttgaagatgggaagttacagcttattgccgaaaaggaa
actaagggggcagtttactctctaagtgctttcaacggcaaactactggctgctattaat
caaaaaatccagctgtacaagtggatgcttcgggaggatggcacccgggaactgcaatct
gaatgcggacatcatggccacatacttgccctctatgtacaaactcgtggggatttcatt
gttgttggtgatctgatgaaatcaatatccttgttaatctacaaacatgaggaaggtgca
attgaggaacgagcccgtgactataatgctaactggatgtcagctgttgagattcttgat
gatgacatctatcttggtgctgaaaacaacttcaacctcttcacagttcggaagaacagt
gaaggggccactgatgaggaacggggccgtcttgaggtggttggtgagtaccaccttggg
gaatttgtcaaccgattctgtcatggttcccttgttatgcgattgccagattctgatgta
ggccagattccaactgttatttttggcaccgttaacggtgtcatcggtgtcattgcttca
cttcctcatgagcagtatgcctttttggagaagctccaatcgaacttaagaaaggtaata
aagggtgttggagggctgagccatgaacaatggagatcattcaacaacgagaagaaaact
gtggaagccaaaaactttctggatggtgatttgatcgaatcattccttgatctgagccgt
ggtaagatggaggagatttccaaggcgatgagtgtttcagtggaggagctttccaagaga
gttgaggaactgacgaggttgcactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (39)   

Download RDF
DBGET integrated database retrieval system