KEGG   Hydrogenovibrio crunogenus: Tcr_0288
Entry
Tcr_0288          CDS       T00296                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
tcx  Hydrogenovibrio crunogenus
Pathway
tcx03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tcx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Tcr_0288
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcx03021]
    Tcr_0288
   03400 DNA repair and recombination proteins [BR:tcx03400]
    Tcr_0288
Enzymes [BR:tcx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Tcr_0288
Transcription machinery [BR:tcx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Tcr_0288
DNA repair and recombination proteins [BR:tcx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Tcr_0288
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: ABB40884
UniProt: Q31IY9
Position
333651..337709
AA seq 1352 aa
MTYSLTEKKRIRKDFATRSSILEVPYLLSLQKESFKEFLQKDKKPLERDPIGLHSAFSSV
FPIHGVAGTADLEYVSYTMGQPEFDVKECKQRGVTYSSPLRVKMRLVLFDKDAPAGKRPV
KDVKEQEVYLGDVPLMTENGTFVINGTERVIVTQLHRSPGVIFDSDKGKSHSSGKVLFNA
RIIPYRGSWLDFEFDHNDCVFVRIDRRRKLPVSIIFRAMGYSSEEILDTFFDHTHISYKK
GAFVMQLVPSQLKGQTAAFDIADGDKVIIKAGKKITARNIKQLQEAKVDSVVVPEEYLLG
KVLSSGITNEETGELVARSNEVIASDLIETMKSIKDLSFRILFIDDLENGSYISDTLNLD
TTTSQLEAQIEIYRMMRPGEPPTKESSEALFNSLFFDEARYDLSSVGRMKLNRRLGRKDN
EGSLVLENQDVVDVVKELLNIRNGLSTIDDIDTLGNRRIRAVGEMAENAFRVGLVRVERA
VKERLNQAETDGLLPQDLINAKPVSAAIKEFFGSSQLSQFMDQVNPLSEVTHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINTLAIYAKTNKYGFLETPYRKV
IDGQVTEEVEYVSAIDEAQFVIAQASAAMDSDNKLLDELVTARHKNETILASSQDIDYMD
VSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIEKTVAIDSGV
TVIALRGGEIVSSDSARIVVRANQEEIAEGETGVDIYNLIKYQRSNQNTCINQKPIVKAG
DVVSRGDVLADGPSTDLGELAIGQNMRIAFMPWNGYNFEDSILVSERVVQEDRYTTIHIE
ELTCLARDTKLGPEEVTSDIPNVGEAALSRLDESGIVYVGAEVKQGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVSKGVEGTVIDVQVFTREGVKKDARALAIQEDELQ
KVRKDIDEQYKILEEDTIDRIQPMLIGQKLVDGTEITADFLASQDSSKWFGLNVADDALS
SHLESLEKQLVAKKEELNGVFEEKKKKLTQGDDLQPGVSKMVKVYVAVKRRIQPGDKMAG
RHGNKGVISRICPVEDMPYDETGRPVDICLNPLGVPSRMNVGQILETHLGLAAEGLGAKI
NAMLEQQADIKELKSFLHKIYNETQGQKVDFDSLTDAEIIELAGNLRKGVPMASPVFDGA
SEDEIKALLRLADLPESGQMKLYDGISGEEFDRPVTVGYMYYLKLNHLVDDKMHARSTGP
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEMLTVKSDDLNGRTRMYKNIVD
GNEYMEPGIPESFSVLRKEIRALGIDIELEQE
NT seq 4059 nt   +upstreamnt  +downstreamnt
atgacctattctttaactgaaaagaaacgtattcgtaaagattttgcgacacgatcttca
attcttgaagttccttatcttctttctctccagaaagaatctttcaaagagtttttacaa
aaagataaaaaaccacttgagcgtgatccgataggattgcattcagcattttcatccgtt
tttccaattcatggtgttgctggaacagcagatcttgagtacgtcagctatacgatgggt
cagccagagtttgacgttaaggaatgtaagcaacgtggtgtaacgtattcatctccttta
cgtgtcaagatgcgtctggttttgtttgataaggatgcgccggctggaaagcgtccggtt
aaggatgttaaagaacaagaggtgtatctaggcgatgtccctttgatgacagagaatggt
acttttgttatcaacggaactgagcgtgttattgtgacacagcttcatcgttctccaggt
gtgatttttgacagtgataaagggaagtcgcattcgtctggtaaagtgttgttcaatgcc
cgaattattccttatcgtgggtcttggttggattttgaatttgatcataatgactgtgtg
tttgttcgtattgaccgtcgtcgtaaactcccagtctcgattattttcagagccatgggg
tatagttctgaagagattctagatacgtttttcgatcatacgcatatttcatataaaaaa
ggtgcatttgttatgcaattggttccaagccaattgaaaggacaaacggctgcgtttgat
attgctgacggcgataaagtgattattaaggccggcaagaaaattacagctcgtaatatc
aaacaattgcaagaagccaaagttgatagcgttgttgttccagaagagtatcttttaggg
aaagtgttgtcttcagggattacgaatgaagaaactggtgagttagttgctcgttcgaac
gaagtgattgccagtgacttgattgaaacaatgaagtcaattaaggatttgtctttccgt
attctgtttattgacgatttagaaaatggatcttatatctcagatacgttgaacttagat
acaacaacctcacagcttgaagctcaaattgaaatttatcgtatgatgcgccctggtgag
ccaccaacgaaagaatcatcagaggcattgtttaacagtttgttctttgatgaagcgcgt
tatgacttgtcttctgttggtcgaatgaagttgaacagacgcttaggacgcaaagacaat
gaaggcagcttggtgcttgaaaaccaggatgttgtagacgtggttaaagagttactgaat
atccgtaatggtttaagcacgattgatgatattgatacactaggtaacagacgtattcgt
gctgttggtgaaatggctgaaaatgctttccgagtaggtttagttcgcgtagaaagagcc
gttaaagaacgtctaaatcaagcggaaacagatggactgttgccacaggatttgattaat
gcgaagcctgtttcagcggctattaaagaattttttggttcaagtcagctgtcacagttt
atggatcaggtgaatcctttatcggaagtcacacataagcgacgtgtgtcagccttgggg
ccaggcggtttgacgcgtgagcgtgcaggttttgaagtacgtgatgtgcatccaacgcat
tatggtcgtgtgtgcccaattgaaacgcctgaaggtccaaacattgggttgattaataca
ttagccatttatgctaaaactaataaatatggtttcttagagacaccgtatcgaaaagtt
attgatggtcaggtgactgaagaagttgaatatgtttcggccattgatgaagcacagttt
gtgattgcacaagcaagtgctgcaatggattcagataataagttgcttgatgagcttgtg
acagcaagacataaaaatgaaactattttggcatcttctcaagatatcgactatatggat
gtctcaccaaaacagatcgtttctgtcgccgcttctttgatcccattccttgagcatgat
gatgctaaccgtgccttgatgggctcaaacatgcagcgtcaagccgttccaacattgcga
gcggataaaccgttagtcgggacgggaattgaaaaaacagttgcgattgactcaggtgta
accgttattgctttacgtggtggagaaattgtttcttccgattctgctcgtatagtggtc
cgtgcaaaccaagaagaaattgctgaaggtgaaactggggttgatatttataacttgatt
aaatatcagcgttcaaaccagaacacgtgtatcaaccagaagccgattgtaaaagcaggc
gatgtcgtatcacgtggtgatgtattggcagatggcccttcaacagatttaggtgagttg
gccattggtcaaaatatgcgtatcgcgtttatgccatggaatggttacaactttgaggat
tcgatcttagtttctgaaagagtggtacaagaagatcgttacacaacaattcatattgaa
gaattgacttgtcttgctcgtgatacaaaattagggcctgaagaagtaacgtcagatatt
ccaaacgttggtgaagcggcactatcaagattagatgaatctgggattgtttacgtcggt
gcggaagtcaaacaaggcgatatcttagttggaaaagtcacgccaaaaggtgagactcag
ttaactccggaagagaaacttctgcgtgcgatttttggtgaaaaagcatcggatgtaaag
gatacatcattacgcgtcagtaaaggggtggaaggaaccgttattgatgttcaggtcttt
acgcgcgaaggtgttaagaaagatgcacgtgccttggcaattcaagaagatgaattgcaa
aaagttagaaaagacattgatgagcaatataagattcttgaagaagacacaattgatcgt
atccagccaatgctgattggtcaaaaattagtggatggaactgaaattacagcagacttc
ctagcttctcaagactctagtaaatggttcgggttgaatgttgctgacgatgcactgtct
tcacatttagagagcctggaaaagcaacttgtagctaagaaagaagagctaaatggtgtc
tttgaagagaagaagaagaagttaactcagggtgatgatctgcagccaggtgtttcgaag
atggttaaggtttatgtggcggttaaacgtcgtattcaaccgggtgataagatggctggg
cgccatggtaacaaaggtgttatttcacgcatttgtccagttgaagatatgccatatgac
gagacgggtcgacctgtagatatctgtttgaatccattaggggttccatctcgtatgaat
gttggacagattctagaaacgcatcttgggcttgcagctgaaggacttggtgcaaaaatt
aatgccatgcttgaacagcaagccgatattaaagagcttaaatctttcttgcataaaatt
tataacgaaactcaaggtcaaaaagtagactttgattcattgactgatgcagaaattatt
gagttggcgggtaaccttcgtaaaggggttccaatggcttcacctgtatttgatggtgca
tctgaagatgagattaaagcgttattaagacttgcagaccttcctgagtcgggtcaaatg
aaactttatgatggtatcagcggggaagagtttgatcgtccagtaaccgttggttatatg
tattacttgaagcttaatcacttggttgatgacaagatgcatgcgcgttcaacgggccct
tacagcttggttacgcaacagccgttaggtggtaaggcgcaatttggtggtcagcgattt
ggtgagatggaagtgtgggctctggaagcttatggggcagcatttacactacaagaaatg
ctgacagttaagtcagatgatttaaatggtcgtacacgcatgtataaaaatattgtcgat
ggcaatgaatacatggagccgggtattccagaatcattcagtgtattacgtaaagaaatt
cgtgccttgggtattgatattgagttggagcaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

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