KEGG   Tenacibaculum dicentrarchi: AUW17_01635
Entry
AUW17_01635       CDS       T04208                                 
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
tdi  Tenacibaculum dicentrarchi
Pathway
tdi02020  Two-component system
tdi02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:tdi00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AUW17_01635
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    AUW17_01635
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tdi03021]
    AUW17_01635
Transcription machinery [BR:tdi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AUW17_01635
SSDB
Motif
Pfam: Sigma54_CBD Sigma54_DBD Sigma54_AID T3SSipB TFIIF_beta SF3b1 MarR
Other DBs
NCBI-ProteinID: ALU74053
Position
complement(370999..372471)
AA seq 490 aa
MLKQSLHYKLLQKLSPQQIQLMKLIQLPTQAFEERLKQEIEENPALDTGKEEPENFEDTL
TDADSDDYNNDEGTEKIDTQDINIDEYLSDDEYPSYKTQANNYSADDEDRQIPYAAGTSF
HQSLNNQLTTFRINEEERAIADFLVGSIDDSGYIRREIIDLVDDLAFTQNVFTSEEKVEN
VLINVVQKLDPVGVGARDLKECLIIQLKSKSAKQTRTLAIDILENAFDHFVKKHYKKLLE
KFNIDEDYLKEIIAEIGKLNPKPGSSYAGNNKLAEQIVPDFSIQIVDGTLELTLNSRNAP
ELHVSREYNNMLKGYSDATKKSKTQKDAVMFIKQKLDAAKWFIDAIKQRQQTLLITMNAI
MLRQEAYFLTGDERKLKPMILKDIADEIHMDVSTVSRVANSKYVTTPYGTKLIKVFFSES
MKNDQGEDVSTREIKKILETVIQEEDKRKPLTDEKLSKILKEKGYPIARRTVAKYREQLD
ISVARLRKEI
NT seq 1473 nt   +upstreamnt  +downstreamnt
atgctaaaacaaagtttacattataaattacttcaaaaattatcgccacaacaaattcag
ttaatgaagttgattcaattgcctacccaagcttttgaagagcgtttaaagcaagaaatt
gaagaaaaccctgctttagatactggtaaagaagagcctgaaaactttgaagatacctta
acagatgctgattctgatgattataataatgacgaaggaactgaaaaaatagatacacaa
gacatcaatattgatgagtatttaagtgatgatgagtatcctagttataagacacaagca
aataattattcggctgatgatgaagatagacaaattccgtatgcagcaggaacaagtttt
catcaatcgttaaataatcaattaaccacctttagaattaatgaagaagaacgcgctatt
gccgattttttagtaggaagtattgatgacagcggctatatccgtagagaaattatcgat
ttagtggatgatttagcttttactcaaaatgtttttacatccgaagaaaaagtagaaaat
gttttaattaatgtggttcagaaactagaccctgttggtgttggtgctcgtgatttgaag
gaatgtttaattattcaattaaaatcaaaatcggcaaagcaaacaagaactttggctatt
gatattcttgaaaatgcttttgatcactttgttaaaaaacattataaaaaactactcgaa
aagtttaatattgatgaagattatttgaaagaaataattgccgaaatcggaaagttaaac
ccgaaacctggtagttcgtatgctggtaataataaattagccgaacagattgttcccgat
ttttcaatacaaattgttgatggtactttagaattgaccttaaactcgcgaaatgctcct
gaactgcacgtttcacgagagtataacaatatgttaaaaggctatagcgatgctacaaaa
aagagcaaaactcaaaaagatgccgtcatgtttattaagcagaaattagatgctgctaaa
tggtttattgatgctataaaacaacgtcagcaaaccttgttaattaccatgaacgctatt
atgttacgtcaggaagcgtattttttaacgggtgatgagcgtaagctaaaaccaatgatt
ttaaaagatattgctgatgaaatacacatggatgtttctacggtttcaagggttgccaat
agtaaatatgtaacaactccttacggaacaaaactgataaaagtatttttctcggaatcg
atgaaaaatgatcaaggtgaagatgtttcaacacgtgaaattaaaaaaatattagaaacc
gttattcaagaagaagataaacgcaagccacttacagacgaaaaattatctaaaatatta
aaagaaaaaggctatcctattgctcgaagaacggttgctaagtaccgtgagcaattagat
atttcggtagcaagattgcgtaaagaaatataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (30)   

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