KEGG   Tepidanaerobacter acetatoxydans Re1: TepRe1_0277
Entry
TepRe1_0277       CDS       T01495                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
tep  Tepidanaerobacter acetatoxydans Re1
Pathway
tep03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TepRe1_0277
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tep03019]
    TepRe1_0277
   03009 Ribosome biogenesis [BR:tep03009]
    TepRe1_0277
Enzymes [BR:tep01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     TepRe1_0277
Messenger RNA biogenesis [BR:tep03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     TepRe1_0277
Ribosome biogenesis [BR:tep03009]
 Prokaryotic type
  rRNA helicases
   TepRe1_0277
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_19 CMS1 Helicase_RecD SMC_N AAA_30 AAA_22
Other DBs
NCBI-ProteinID: AEE90480
UniProt: F4LTE9
Position
292559..294148
AA seq 529 aa
MSQMKFEELNLSKELLRAINDMGFEEATPIQSQAIPYIYEGRDVIGQAQTGTGKTAAFGL
PILDMIDTDDKNQQAIILCPTRELAIQVAEELKALSKYKEGMKILPVYGGQPIERQIHAL
KRGVQIIIGTPGRVMDHMRRHTLKLQNTKIVVLDEADEMLDMGFREDIEKILEDTPKARQ
TLMFSATIPKPILELAERYLNNPQLIKVVHKELTVPSVEQYYFEVKERDKVEALSRLIDF
YNPNLALVFCNTKKRVDELMEQLQARGYSADGLHGDMSQSQRDRVMTKFKNGTIDILVAT
DVAARGLDVDDVDVVVNFDVPQNDEYYVHRIGRTGRAGRSGKAFTFVIGRDIYKLKDIQR
YANTKILRREIPSLLDVEETRINLLLEKVKQVVDDGGLGKYNQWIERLMEEEYTSLDLAA
ALLKIVLGKDGEQEQPESSELDIESTGGDSGMARLFINIGRNQKIRAKDIVGAIAGETGM
PGKLIGSIDIYDKFTFVEVPAEYAVDVLNTMKNNQIKGKKINIEPANKK
NT seq 1590 nt   +upstreamnt  +downstreamnt
atgtcacaaatgaaatttgaagaactaaatttatccaaggaactgctcagagccataaat
gatatgggttttgaggaagccacaccaattcagtcccaagcaattccctatatttacgaa
ggaagagatgtcataggccaagctcagaccggcacaggtaaaactgcagctttcgggttg
ccgatattggatatgatagacactgatgacaaaaatcagcaggcgattatcctttgtcca
accagggaactggccattcaggtggccgaagagctaaaagccctttctaaatataaagaa
ggaatgaagattttgcctgtttatggtggtcagccaatagaaaggcaaatccacgcttta
aaaaggggtgttcagattatcataggaacccccggcagagttatggaccatatgagaagg
catacgctgaaactgcaaaatacaaagatagtagttttggatgaagcggatgaaatgctg
gacatgggttttagggaagatattgaaaaaattctggaagataccccaaaggcaagacaa
actttaatgttttccgcaactatacctaaacctattttagaacttgccgaaagatacctg
aataatccccaacttataaaagtagtgcataaagagcttacggttcccagcgttgaacag
tactactttgaggttaaggaaagagataaggttgaagccttatcacgcctaattgacttt
tataatccgaatttagctctagtgttttgcaacaccaagaaacgtgttgatgagctgatg
gagcagctgcaggccagaggatattctgctgacggattacacggcgacatgtcacagtct
caacgggacagggttatgaccaaattcaaaaatggtacaatcgatatcctggtagctaca
gatgttgcagccagagggctggatgtagatgatgtagatgttgtagttaactttgatgtg
ccgcaaaacgatgaatactatgtgcatagaataggccggacaggccgagcaggaaggtcc
gggaaagcttttacctttgtaataggaagagatatttacaaattaaaggatatacaaaga
tatgccaataccaagatacttcgccgagagataccgtcgcttcttgatgtagaagaaact
cgaataaatctgcttcttgagaaagtaaagcaggtagtggacgatggaggccttggcaag
tataatcaatggattgaaaggcttatggaggaggaatatacatccttggatctcgctgct
gccttgctaaaaatagtacttggcaaggacggtgaacaagaacagcctgagagctcagaa
ttggatatagaaagcaccggaggagattcggggatggctagactctttataaatatcggt
agaaatcaaaagataagagcaaaggatatagtgggggccattgccggagaaaccggtatg
ccgggaaaactcataggcagtattgatatctatgataaatttacctttgttgaggtacct
gcagaatatgcagtagatgtcctcaatactatgaagaataatcaaattaagggtaaaaaa
ataaatatagaaccagctaataagaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (43)   

Download RDF
DBGET integrated database retrieval system