KEGG   Tepidanaerobacter acetatoxydans Re1: TepRe1_1978
Entry
TepRe1_1978       CDS       T01495                                 
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
  KO
K03092  RNA polymerase sigma-54 factor
Organism
tep  Tepidanaerobacter acetatoxydans Re1
Pathway
tep02020  Two-component system
tep02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:tep00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    TepRe1_1978
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    TepRe1_1978
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tep03021]
    TepRe1_1978
Transcription machinery [BR:tep03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     TepRe1_1978
SSDB
Motif
Pfam: Sigma54_CBD Sigma54_DBD Sigma54_AID HTH_Tnp_ISL3 HTH_23 HTH_3 HTH_17 HTH_Crp_2 Sigma70_r4_2 Sigma70_r4 LacI Xre-like-HTH HTH_11 HTH_29 HTH_21 HTH_24 HTH_38 MarR_2 Arg_repressor Phage_CII HTH_AraC HTH_Tnp_4 HTH_IclR MarR HTH_31 HTH_Tnp_Tc3_2
Other DBs
NCBI-ProteinID: AEE92106
UniProt: F4LQV3
Position
complement(2061532..2062929)
AA seq 465 aa
MQMNFSLKLSQTQKLVMTPELRQAITILQLSTLELDQYIENQLLENPLLDVNEDIFKNDD
TAEAEKVEEKEDDNIDWDEYFQDEANSTPIRVQRERKEEGVGYENFVSSTPSLQEHLMMQ
LHISSVSKTALKIGEFLIGNLDKNGYLAITIKEVARLLKVGENEVEEALKIIQSFDPPGV
GARNLTECLLIQIEQKGINTPKIKDLVKNHLIDLAEARFPRIAEALNISLTEVQNLKDIL
VTLDPKPGRNFTSANDVHYIIPDAVIEKVGSEYLVIMNDTVSPRLSINAYYRSLLTSEDK
ESNIAKFLSNRLDSALWLIKSIEQRRITLHKVIQSIADVQKDFLDNGLMYLKPLTMKQIA
DMVGVHESTVSRAISGKYVQTPRGVFELKFFFQSGLDNVNGTTTSSESIKKMMQEMIEEE
DPYNPLSDQKIADILKEKGITISRRTVSKYREEIGILSSTKRKRY
NT seq 1398 nt   +upstreamnt  +downstreamnt
atgcagatgaatttcagtctgaaactatcacaaacccaaaagcttgtcatgactccagag
ctgcggcaggctataaccattttgcaactttcgactcttgagctagaccaatatatagaa
aatcagcttttagagaatccgcttctagatgtaaatgaagatatttttaaaaatgatgat
actgctgaagctgaaaaggtcgaagaaaaggaagacgacaatattgattgggatgagtat
tttcaagacgaagctaacagcactccgattagagtgcagcgtgagcgaaaagaagaagga
gtagggtatgaaaattttgtatcatcaacgccttctttgcaagagcatctgatgatgcaa
ctgcatatttcatcagtatcaaagacagctctaaaaattggggagtttttgataggcaac
ttagacaaaaacggctatcttgcaataactataaaagaagtggccaggcttttaaaagta
ggggaaaatgaggtagaagaggcattgaaaatcattcaatcatttgacccgccaggtgtc
ggagccagaaatctgaccgaatgtttacttatacaaatagagcaaaaaggtattaatact
cccaaaatcaaggatttggtcaaaaatcacctgatagaccttgcggaagcacgctttcca
cgaatagccgaagcattgaatatcagcttgactgaagttcaaaatttaaaggatatttta
gttacccttgaccccaaaccaggaagaaattttacgtctgcaaatgatgtccattatata
attccagatgcggtcattgaaaaggtaggcagcgaatacttggtaatcatgaatgatact
gtttctccaaggctctcaataaacgcctattaccgttcactgctgacttctgaagataag
gaatcgaacatcgcaaagtttttatctaatcgactcgattcagctttatggcttataaaa
agcattgaacaaagacgcataacccttcataaagtaatacaatctattgctgatgttcaa
aaagattttttagataatggccttatgtatcttaagccacttacaatgaagcagattgcc
gatatggtgggggttcatgaatctaccgtatccagagctatcagcggcaaatatgttcag
actcccagaggggtttttgaattaaaatttttcttccaaagcggtcttgacaatgtcaac
ggtaccactacttcttcggaaagtatcaaaaaaatgatgcaggaaatgattgaagaagaa
gacccctacaatcccttaagtgaccagaaaattgcagatatattgaaagagaagggaatc
actatatcccgaaggacagtgtctaaatatcgggaagaaattggcatattatcttcaaca
aaaagaaaaagatattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (26)   
   Pfam (26)   
All databases (50)   

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