KEGG   Tetrahymena thermophila: TTHERM_00161180
Entry
TTHERM_00161180   CDS       T01020                                 
Name
(RefSeq) replication factor C, activator 1
  KO
K10756  replication factor C subunit 3/5
Organism
tet  Tetrahymena thermophila
Pathway
tet03030  DNA replication
tet03410  Base excision repair
tet03420  Nucleotide excision repair
tet03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tet00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TTHERM_00161180
   03410 Base excision repair
    TTHERM_00161180
   03420 Nucleotide excision repair
    TTHERM_00161180
   03430 Mismatch repair
    TTHERM_00161180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tet03032]
    TTHERM_00161180
   03036 Chromosome and associated proteins [BR:tet03036]
    TTHERM_00161180
   03400 DNA repair and recombination proteins [BR:tet03400]
    TTHERM_00161180
DNA replication proteins [BR:tet03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    TTHERM_00161180
  DNA Replication Termination Factors
   ELG1-RFC complex
    TTHERM_00161180
Chromosome and associated proteins [BR:tet03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    TTHERM_00161180
DNA repair and recombination proteins [BR:tet03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     TTHERM_00161180
  Check point factors
   HRAD17(Rad24)-RFC complex
    TTHERM_00161180
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA DNA_pol3_delta AAA_22 AAA_16 ATPase_2 Transglut_C ABC_tran RuvB_N FAD_SOX AAA_5 MRP-S28
Other DBs
NCBI-GeneID: 7833946
NCBI-ProteinID: XP_001009848
TGD: TTHERM_00161180
UniProt: Q22W14
AA seq 423 aa
MLRGQFQKIQIIRIILLKIQVLKARDRQTERYINISYSKFFAKKQFISISTKQFKKRFIN
KKILQMEKLWVDEIRPKSLDKLDYHPLLTEKLQKLAHSEDFPHLLLYGPNGAGKKTRAMA
FLQEVYGNGVHKVKSEEREFKVNPNTSTTVEVNIISSNYHLDVTPADAENQDRAVIQKLI
KEVASTHQLDPNSQRRFKVIIINEVDRLTLEAQASLRRTMEKYIGRCRLILIAENIGRVI
LPLRSRCLLIRVAAPSEQDVKAVVRKLNNEKNLNIPDDLACKFAKSCDYNLRAVILNLQT
QKLLKSTYNNSMEVQEPEWKKEIKNIAGIIKEHQNPAKLKEIRSKFYDLLVNCIPGDIII
KNLMYSLLDLIDQNDVHTKQEIIYYAAHHENLMNMGSKPVFHLEAFAAQCMLSYKKSILK
LKD
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgttacgcggttaattccaaaaaatataaataattagaattatacttcttaaaatctaa
gttttgaaagctagagacaggcaaacagaaagatatataaatattagctattcaaaattt
tttgcaaaaaaataatttatttcaatcagtacaaaacagtttaaaaaaaggtttatcaat
aaaaagatattataaatggaaaagctttgggtagacgaaattagaccaaaatcacttgat
aagttagattatcatcctttgttaactgaaaaattataaaagctagctcattctgaagat
ttccctcatttgttattatatggacctaatggtgcaggtaaaaaaacaagagctatggct
ttcttgcaagaagtttatggaaatggtgtgcataaagtcaaatctgaagaaagagaattt
aaagttaatccaaatacaagcactacagttgaagttaatataatttcatctaattatcat
ttagatgtcacacctgctgatgcagagaattaagatagagcagtcatttagaagttgatt
aaagaagttgcttcaacacattagttagatccaaattctcaaagacgttttaaagttatt
attataaacgaagtagatcgtcttactcttgaagcttaagcctctctaagaagaactatg
gaaaaatatattggcagatgcagattaattttgatagctgaaaatattggaagagttatt
ttaccacttagaagtagatgcctattaattagagttgctgcaccctcagagcaagatgtt
aaagctgttgttagaaagcttaataatgaaaagaatttaaatatacctgatgatctagct
tgcaaattcgcaaaatcatgtgattataatttaagagcagtcattttaaatttgcaaaca
caaaagctactcaaaagtacttacaacaattctatggaggtataagagcctgaatggaag
aaagaaattaaaaatatcgcaggaattatcaaagagcattaaaatccagcaaagttaaaa
gaaattagaagtaaattttatgacttattggtaaattgcataccaggagatataattata
aagaatttgatgtacagtcttcttgatttaattgaccaaaatgatgtacatactaaataa
gaaatcatatactatgctgctcaccatgagaatttgatgaatatgggatcaaagcctgtc
ttccacttagaagcatttgctgcatagtgcatgctaagctacaagaaatctatattaaaa
ttaaaagattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (47)   
   KEGG ORTHOLOGY (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   TGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (71)   

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