KEGG   Tetrahymena thermophila: TTHERM_00220750
Entry
TTHERM_00220750   CDS       T01020                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase
  KO
K13025  ATP-dependent RNA helicase [EC:3.6.4.13]
Organism
tet  Tetrahymena thermophila
Pathway
tet03013  Nucleocytoplasmic transport
tet03015  mRNA surveillance pathway
tet03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tet00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TTHERM_00220750
  09122 Translation
   03013 Nucleocytoplasmic transport
    TTHERM_00220750
   03015 mRNA surveillance pathway
    TTHERM_00220750
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tet03019]
    TTHERM_00220750
   03041 Spliceosome [BR:tet03041]
    TTHERM_00220750
   03009 Ribosome biogenesis [BR:tet03009]
    TTHERM_00220750
   03012 Translation factors [BR:tet03012]
    TTHERM_00220750
Messenger RNA biogenesis [BR:tet03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     TTHERM_00220750
   mRNA cycle factors
    Stress granule specific factors
     TTHERM_00220750
Spliceosome [BR:tet03041]
 Complex C
  Other components
   EJC/TREX
    TTHERM_00220750
Ribosome biogenesis [BR:tet03009]
 Eukaryotic type
  90S particles
   Helicases
    TTHERM_00220750
Translation factors [BR:tet03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    TTHERM_00220750
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_30 AAA_19 UTP25 UvrD-helicase AAA_22 PhoH SLFN-g3_helicase CMS1 TniB ERCC3_RAD25_C SPP1_GP23-1 SWI2_SNF2 Helicase_RecD
Other DBs
NCBI-GeneID: 7833802
NCBI-ProteinID: XP_001020647
TGD: TTHERM_00220750
UniProt: I7MFP3
AA seq 396 aa
MDSSKLKEQNQQYESNEDIEVITQFEKMGLKEELLRGILTYGFDKPSAVQQRAIKPIIKG
RDVIVQSQAGTGKTGVFTIAALQIVDKNLREPQVIVLSPTRELAEQTQKVCLALGDYMNI
LVHCCIGGKSMDDDINRLEKGVQIISGTPGRIYDMIQRRHLKTRNVKMLVLDEADQMLSM
GFKEQVYDIYRYLPHKNQNVVVSATLPQEILEMTNKFMNDPIKFLVKRDELTLEGIKQFF
ILVEKEEWKFETLCDLYNTITITQAVIFCNTIKAVKWLSGKMREQNFSLCSIHGELNQKE
RDKIMQDFRNGEYRVLVATDIWGRGLDVQQVSVVINYDLPTNRELYIHRIGRSGRFGRKG
VAINFVKNEDVSALRDIEQYYSTQIDEMPYNVSELI
NT seq 1191 nt   +upstreamnt  +downstreamnt
atggactcatctaaacttaaagaatagaattaataatatgaatctaatgaagatatcgaa
gttatcacttaattcgaaaagatgggcttgaaagaagagctccttagaggtatcttaact
tatggttttgacaaaccatcagctgttcaacaaagagctattaagcctataattaaaggt
cgtgatgtcatagttcaaagtcaagcaggtactggtaaaactggtgtctttactattgca
gctcttcaaatagtcgacaaaaacctccgtgaaccttaagtaattgttttatctcctact
cgtgaacttgctgagtaaactcaaaaggtttgtttagctcttggtgactacatgaacatt
ttagttcactgttgtattggtggtaagagcatggatgatgatattaatagattagaaaaa
ggtgtttaaattatttcaggtactcctggtcgtatttatgatatgatttagcgcagacac
ttgaaaactcgtaacgttaagatgcttgttttggacgaagctgatcagatgctttctatg
ggtttcaaagaataggtttatgatatttatagatatcttccccacaaaaatcaaaatgta
gttgtcagtgcaaccttacctcaagaaattttggaaatgactaataaatttatgaatgat
cctatcaaattcttagtcaagagagatgagcttacacttgaaggtattaaatagtttttc
attttagttgaaaaagaagaatggaagtttgaaacattatgtgatttatacaatactatc
acaatcactcaagcagttatattttgtaataccatcaaggctgtaaaatggctttctggt
aaaatgagagaacaaaacttctctctttgttccattcatggtgagttaaatcaaaaggaa
agagataaaattatgcaagatttccgtaacggagagtatcgtgttcttgttgccacagat
atctggggtagaggtcttgatgtttaataagtttctgttgttatcaattacgatcttcct
actaatcgtgaactttacatccatagaatcggtcgttcaggccgttttggaagaaaaggt
gttgcaatcaattttgttaaaaatgaagatgttagtgccttgagagatattgaatagtat
tactctacttaaattgatgaaatgccttacaatgttagtgaattgatttga

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (55)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   TGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (84)   

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