KEGG   Toxoplasma gondii: TGME49_315720
Entry
TGME49_315720     CDS       T01093                                 
Name
(RefSeq) Smg-4/UPF3 family protein
  KO
K14328  regulator of nonsense transcripts 3
Organism
tgo  Toxoplasma gondii
Pathway
tgo03013  Nucleocytoplasmic transport
tgo03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tgo00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    TGME49_315720
   03015 mRNA surveillance pathway
    TGME49_315720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tgo03019]
    TGME49_315720
Messenger RNA biogenesis [BR:tgo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     TGME49_315720
   mRNA cycle factors
    P-body specific factors
     TGME49_315720
SSDB
Motif
Pfam: Smg4_UPF3 BRAP2 RRM_1
Other DBs
NCBI-GeneID: 7895534
NCBI-ProteinID: XP_018635312
UniProt: S8EQM1
Position
XI:join(4926214..4927072,4927596..4927707,4928304..4928391,4928803..4928920,4929564..4929665,4930302..4930372,4931131..4931193,4931989..4932228,4932726..4932857)
AA seq 594 aa
MPPREAPTSRPRGERPEFASGGSSSATGVAPRRSFVPGMILTKQLLIPVKSTSPSYAAGS
AARDKNTATPARPPSTSRSSLSASSSSSSSASSSTSSSSSALSSSSSSAFSSSSPSQHRG
QQPSSVLSSVSAGAASSARPGEDGRASRGVCSRGDSRGGDKLGVSNQAPSRNSPAGLGAD
AASGGRRGEREPRAPQIFRGGREAREQKPSNLSRGRDIPATSAERGGDGASDRGGCPKQE
EARGSETRDRGDTGENDAKGGKPSEDTTSENVQATTQAYKAKTKTKVVVRLLPPSAREED
LLELVAAPLQGKMSWTRFVPGRQQKSDVPSRNSTWYVNFSTEEDADDFIKSFHGKVFVDE
RHNTFKAVARLAPYQKVPRKTGPDRREGSLAKDPLYVNFLQALKDGTAFESHAAPPGSEE
LETVVDDDGVTLSSLVLALREKYGVKTFVKGCPYTLAMWRRTFAVSGSEEEDLEASGDRN
EVERRDEKSAVRRRGKGSAKTARETQRTPAAASSVQTASGPPGASGARSLRPGPSPSSTQ
SNSSDTSRSTAHQGTTGSEARGVWRALLGIQKRPTTAGGSAKPANEPQAKASIS
NT seq 1785 nt   +upstreamnt  +downstreamnt
atgcctcctcgagaagcgccgacgagccgcccacgaggcgagaggccagagttcgcttcc
ggaggatcttcctctgcgacgggagtcgctccgcggcgttcctttgttccaggaatgatt
ttaaccaagcagctgctcatccctgtcaagtcgacttctccctcgtacgctgcaggcagt
gctgcgcgagacaaaaacacagcgacgcccgctcgacctccctccacctcgcgctcgagt
ctctctgcatcttcttcctcttcctcttctgcgtcgtcttctacctcttcgtcgtcttct
gctctctcttcttcttcgtcttctgctttttcttcttcgtctccctctcagcaccggggc
cagcagccttcgtccgttctctcatccgtttctgcgggtgcggcgtcttctgcgcgaccg
ggagaagatggccgcgcgtctcgcggggtgtgcagccgaggagactctcgcggcggagac
aagctaggagtctcgaaccaggcgccttcacggaactcgccagctggcctcggagcagac
gcggcgtctggcggccggcggggggagagagagcctagggcgccacagatctttcgcgga
ggcagagaagcgagagagcagaagccgtcgaacttaagccgcggtcgagacataccggcg
acgtcggcggagcgcggaggagacggcgcgtcggaccgaggaggctgcccgaagcaagag
gaagccagagggagcgagacacgagacagaggagacactggagagaacgacgcgaaggga
gggaagccgagtgaagacacaacctccgagaatgtgcaagcgacgacccaagcctacaag
gccaagacgaagaccaaggtcgtcgtacggctgctcccgccctccgcgcgcgaggaagat
ctcctcgaactcgtcgcggcacccctccaggggaaaatgtcgtggacgcgcttcgtccct
ggccgccaacagaaatcggatgtccccagtcggaacagcacctggtacgtcaacttttca
actgaagaggacgcggacgacttcatcaagagtttccacggaaaggtgtttgtcgatgaa
cgccacaatactttcaaggccgtggcgcgcctcgcgccctaccagaaggttccgcgaaaa
acagggcctgaccgtcgtgaagggagccttgcaaaggatccactctacgtcaacttcttg
caagctctcaaagacggcacagcgtttgaatcgcacgcggctccaccgggctcggaggaa
ctcgagactgtcgtcgatgacgatggggtgacactctcttccctcgttctcgcgctgaga
gaaaagtacggtgtcaaaaccttcgtgaaagggtgtccgtacactctggccatgtggcgt
cgtaccttcgctgtgagcggttcggaggaggaagacctcgaggcttctggtgaccgcaac
gaggtcgagaggagagacgaaaagagcgccgtccgccgccgcggaaaaggatcagcgaaa
acggctcgagaaacccagcgcacgcccgctgctgcgtcgagtgtacagactgcctcaggg
cctccaggagcctctggagcgaggagcctccggcctggaccctcgccgtcttcaacgcag
tcgaactcttctgatacctctcgctccactgcccaccaaggaacaacgggcagtgaagct
cgaggagtctggcgcgctctgctgggaattcagaagagacccaccacagccggtggctcc
gcgaaacctgcgaacgagccacaagcaaaggcgtctatctcgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (50)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (61)   

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