KEGG   Taeniopygia guttata (zebra finch): 100190050
Entry
100190050         CDS       T01082                                 
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2
  KO
K10858  DNA mismatch repair protein PMS2
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03430  Mismatch repair
tgu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    100190050 (PMS2)
   03460 Fanconi anemia pathway
    100190050 (PMS2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tgu03400]
    100190050 (PMS2)
DNA repair and recombination proteins [BR:tgu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     100190050 (PMS2)
SSDB
Motif
Pfam: MutL_C DNA_mis_repair HATPase_c_3 HATPase_c
Other DBs
NCBI-GeneID: 100190050
NCBI-ProteinID: XP_030140867
Position
14:1351496..1363163
AA seq 870 aa
MEAAAPCPQPAGAIRPIDRGSVHRICSGQVVLSLGTAVKELVENSLDAGATNIDIKLKDH
GAELIEVSDNGVGVEEENFEGLTLKHCTSKIQDFSDLIHVETFGFRGEALSSLCALSDVT
IFTCHKSAKVGTRLVFDHNGRITQKTPLPRQQGTTVSIQQLFYTLPVRHKEFQRNIKKEY
AKMVQLLQAYCIVSKGVRINCTNQVGQGKKTSVISTAGSPSVKENIGAVFGQKQLQSLIP
FVQLPPSEAVCEEYGLNPADMPQNLYSISGFISHCDHGVGRSTTDRQFFFINQRPCDPAK
VVKIVNEVYHLHNKHQYPFVVLNIGVDSECVDINVTPDKRQILLQEEKFLLAILKTSLME
MFGSNVNKLNVNQKLLDIAGNLKKTLPEEAEKPQADVLSDSETENPSGEGKRIMTLARLR
ESFSLHQAAKSNFQSSKKVKQHSSPRQRLLDTTGSTVKIQKDFSIQKAESCHKLDSKVSI
PRRHLSKLEDTADSGFCSISESDAGCSTPEAGSCIISESAINSEEEFCSTEEQMQKECLK
TAGCSKKSLDSDVEVLGTEPKLDQVNDWTDQNKFSQEANSCSLRVKRFKSRKFKSEADDS
KAGKYLEVKNTSVDVLVEVQKKIVPLEFSMKVLAEKVKKVIQQQQKNTETENYRRFKAKI
SPGDNKVAEDELRKEISKEMFAKMEIIGQFNLGFIIAKLNSDLFIIDQHATDEKYNFEML
QQHTVLQGQKLIVPQNLNLTAVNETVLIENLEIFRKNGFDFVINENAPVTQRVKLVSLPT
SKNWTFGPQDIDELIFMLSDCPGVMCRPSRVRQMFASRACRKSVMIGTALNVQEMRKLIT
HMGEIEHPWNCPHGRPTMRHIVSLDLISPQ
NT seq 2613 nt   +upstreamnt  +downstreamnt
atggaggcggctgcgccctgcccgcagcccgccggggccatccggcccatcgaccgcggc
tctgtccatcgcatctgctcggggcaggtcgtgctgagcctcggcacggccgtgaaagag
ctggtggaaaacagcctggatgccggagctaccaacatcgatataaaacttaaagatcat
ggggcagaactgatagaagtttcagataatggagttggagtggaagaagaaaactttgaa
ggcttgactctgaaacattgcacatcaaagatacaagatttttctgatctaatacatgtt
gaaacatttgggtttcgaggtgaagctttgagttcactgtgtgcattaagtgatgttacc
attttcacctgtcataagtcagcaaaggttgggactcgtttggtgtttgatcacaatggc
agaattactcagaagactcctttgccacgacagcagggaacaactgtcagcatccagcag
ctgttttatacgttaccagtgcggcataaagagttccaaagaaacatcaaaaaggaatat
gcaaaaatggtccagctgttacaggcctactgtattgtttccaaaggagtgcggattaac
tgcactaatcaagttggccaggggaaaaaaaccagtgtgatatccactgctggaagtccc
agtgtgaaggagaacattggagcagtattcggacaaaaacagttgcagagccttattcct
tttgttcagcttcctccaagtgaagctgtttgtgaagaatatggactcaaccctgcagac
atgccacaaaatctttatagtattagtggcttcatttctcattgtgatcatggtgttgga
aggagtacaacagacagacagttcttctttatcaaccaacgtccctgcgatccagccaag
gttgtcaagattgtgaatgaagtttatcacttacacaataaacaccagtatccatttgtt
gtccttaacattggggtagattctgagtgtgttgacatcaatgtaactcctgacaaaaga
caaattttacttcaggaggaaaagtttttattagcaattctaaagacttctctgatggag
atgtttggtagtaatgttaacaaactgaatgtcaatcagaaacttctggatattgcaggt
aacttgaagaagacacttcctgaagaggcagaaaagcctcaggcagacgtgctgtctgac
tctgagactgaaaatccaagtggtgaaggcaaaagaataatgactcttgccagattaagg
gagtcattctctctccatcaagcagcaaaaagtaattttcaaagctctaaaaaggtaaaa
cagcacagttcccctagacaaaggttacttgataccactgggagtactgtaaagattcaa
aaggatttctcgattcagaaggctgaaagttgtcataagttggactcaaaggtgtcaatt
ccaaggagacacttgagcaaattagaagacactgcagattctggattctgtagtatttct
gagtcagatgctggatgtagtacaccagaagctggaagctgcatcattagtgaaagtgca
attaattctgaggaagaattctgtagcacagaagaacagatgcagaaggaatgtcttaaa
actgctggatgcagtaagaagtcactggactctgatgttgaggtcttgggcactgaaccc
aagctagatcaagtgaatgactggactgatcaaaacaagttttctcaagaagccaatagt
tgttccctaagagtaaaacgttttaaaagcagaaagtttaaaagtgaagcagatgattcc
aaggcaggtaaatatcttgaagtgaagaacactagtgttgatgtactggtggaagttcaa
aagaaaattgtgcctcttgaattctctatgaaggttttggcagaaaaagtaaaaaaggta
atacagcaacaacagaaaaatacagaaactgaaaactacagaagatttaaagcaaaaatt
agtcctggggacaataaagtagcagaagatgaattaagaaaagaaatcagtaaagaaatg
tttgcaaaaatggaaatcattggccagttcaatttggggtttataatagcaaagttgaat
tctgatcttttcataattgaccaacatgctactgatgagaaatacaactttgagatgttg
caacaacacactgttctccaaggtcagaagctgatagtgcctcaaaatctcaatttaaca
gcagtaaatgaaactgtattgattgaaaacctggaaatattcagaaaaaatggctttgat
tttgtcataaatgaaaatgctcctgtaactcaaagagtgaaattagtatcactgccaaca
agcaaaaactggacttttggtccacaagacatagatgagctgattttcatgttgagtgac
tgccctggagtgatgtgcaggccctccagggtcagacagatgtttgcttctcgagcttgc
aggaagtctgtgatgattggaactgcactgaatgttcaggaaatgagaaaactgatcacc
catatgggtgagattgagcatccctggaactgcccccatggaagacctactatgagacac
atagtcagtttggacttgatttcaccacaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

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