KEGG   Taeniopygia guttata (zebra finch): 100220355
Entry
100220355         CDS       T01082                                 
Symbol
MSH3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
  KO
K08736  DNA mismatch repair protein MSH3
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    100220355 (MSH3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tgu03400]
    100220355 (MSH3)
DNA repair and recombination proteins [BR:tgu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     100220355 (MSH3)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_II MutS_IV
Other DBs
NCBI-GeneID: 100220355
NCBI-ProteinID: XP_030113363
Position
Z:complement(78262031..78358052)
AA seq 1090 aa
MPRGRRGGGAAGQPVLSRFFGAAASGGQRGPLHTASKCGTKRSTSTENNEPCEKKTKARQ
ITLEEVCNPLKTQDKKDPQKCEKSRISLETLGRLREFCSDSNQQCTSLQEDGSREKEKCP
SITGRSSELKNPLPSWDSSPKAAQKEELQCNLSQFSVSLKSYENSQNSSETNLNRRTKSI
YTPLELQFIEMKKRYKDAVLCVECGYKYRFFGQDAEIAAKELNIYCHLDHNFMTASIPSH
RLFVHVRRLVAKGHKVGVIKQMETAALKAAGENKSSLFSRKLTALYTKSTLIGEDVNPLL
KLDDAVDVEEVTADVPDNYLLCICENRDSLKDRKKGDIVTGIVAIQPTTGEVIFDSFRDC
ASRSELESRVLRLQPVEIILPSRLSDQSEKLIHSITSMRLQDDRIRIERMENLNFEYSHA
FQKVTDFYAKEVPGTAGPQNLSVILSLDKPVICSLAAVITYLKEFNLEKMLYNPSNFKQL
SSEAEYMTLNGTTMKNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRRLKKWVTQPLLKLS
EINARLDAVSEILLSESSVFGQIQNLLCKLPDLERGLCSVFHKKCSTQEFFLIVSTLSRL
DLEIQAFVPVIQSHVRSPLLKNALLEIPDLLSPVKQYLKILNEEAAKTGDKTQLFKDLTD
FPAIRKKKEEIQDVLSKIQLHLPDIRKQIKNPSAEYVAVSGQEFLIEVKNSHKSSVPSDW
VMVSSTRAVSRFHSPLVTENYRVLQRLREQLGLACSAEWLCFLDHFSEHYHPVSKAICHL
ATVDCLFSLAQVAKQGDYCRPTVQDNRREIIIKNGRHPVIDVLLGEQDQYVPNTTSLSGD
GERVMIITGPNMGGKSSYIKQVALITVMAQIGSFVPAEEATVGVVDGIFTRMGAADNIYK
GRSTFMEELTDTAEIIRKATSRSLVILDELGRGTSTHDGIAIAYATLEHFIRDVQALTLF
VTHYPSVCELQQRYPRAVGNYHMAFLLSEEDAGQHTGSEVEENPEFITFLYQITKGVSAR
SYGLNVAKLADIPEEILKNAAYKSKELERIVNMKRRKMKSFAEAWKINDSQELQKWKNMY
EPKDERKDSF
NT seq 3273 nt   +upstreamnt  +downstreamnt
atgccgcggggccggcggggcggcggggccgcggggcagccggtgctcagcaggttcttc
ggggcggcggcgagcggcggccagcgcggcccgctccacacggcttctaaatgtggcaca
aaaaggagtacatctactgaaaacaatgaaccctgtgaaaagaagaccaaggcacgccaa
attactctggaagaggtctgtaacccactgaagactcaggataaaaaagaccctcagaag
tgtgagaagtcccgtatcagtttggaaactctgggcaggctgagagagttctgcagtgat
tcaaaccagcagtgtaccagcctccaggaggatggctctcgggagaaagaaaaatgtccc
agtattactgggaggagctcagaactgaaaaatccccttccatcttgggacagcagccca
aaggctgcacagaaggaggagttacaatgtaatcttagtcagttttctgtgtctcttaag
tcttacgaaaattctcaaaattcatcagagacaaatcttaatagaagaaccaagagtatt
tacactccactagaactccagttcatagaaatgaagaaaaggtataaagacgctgttttg
tgtgtggaatgtggatacaaataccggttctttggacaagatgcagagattgcagctaag
gagctgaacatctactgtcacctggatcacaacttcatgactgccagcatccccagccac
cggctcttcgtccacgtgcgccgcctcgtagccaagggacacaaggttggagtaataaaa
caaatggagactgcagcactgaaagctgctggagaaaataaaagctctctcttcagccgt
aagctgactgccctctacactaagtctacacttattggagaagatgtgaaccctttgctg
aagctggacgatgctgtagatgttgaagaggtaacagcagatgtccctgataactacctc
ctctgcatctgtgaaaatagagacagcctgaaggacaggaagaaaggtgacattgttaca
ggcattgtggcgatccagccaactacaggagaagtaatttttgacagttttcgggactgt
gcttcccgctcggagctggagagtcgggttctgcgcctgcagccagttgaaataattctt
ccatcaaggctgtcagaccaatctgaaaagctcatccacagtataacctccatgaggtta
caggatgacagaattaggatagaaaggatggaaaacctcaattttgagtacagccatgct
tttcagaaggttactgacttctatgcaaaagaggtgcctggtactgcaggtcctcaaaac
ctatctgtaatactaagcttggacaagcctgttatttgctctctggcagcagtaattaca
tatctcaaagaatttaatttggaaaagatgctttacaatccaagcaatttcaaacagttg
tccagtgaagctgaatacatgacacttaatgggacaacaatgaaaaatcttgaaatttta
cagaatcagactgacatgaaaacaaaaggaagcctgctgtgggtcttggaccacactaaa
acttcgtttggacgtcggaggttgaagaaatgggtgacccagcccctcctgaaactgagt
gaaataaatgcccgtcttgatgctgtgtctgaaattctgctgtcagaatccagcgtgttt
ggtcagattcaaaatcttctttgtaagctgccagatttggagagaggcctctgcagtgtt
ttccacaagaagtgctctacccaggagttcttcttgatagtcagcactctgtctcgtctg
gacttggaaattcaagcttttgtcccagtcatacagtcccatgtgagatctcctctatta
aaaaatgcactgttggaaatcccagaccttctctccccagtaaagcagtatttaaagatc
ctgaatgaagaagcagccaagactggagataaaacacagttgttcaaggacctgacggac
ttccctgccatccgaaagaaaaaggaggagatccaggatgtgctttctaaaatccaattg
catctgccggatattcgtaaacagattaagaacccttctgcagagtacgttgcagtttcg
ggtcaagagttcttgatagaagtcaagaattcccataaatcgtctgtgccgtctgactgg
gttatggttagtagcaccagagccgtcagccgcttccactcgccgctggtcacggagaac
taccgcgtgctgcagcggctccgcgagcagctcggcctcgcctgcagcgccgagtggctg
tgcttcctggaccatttcagtgaacattatcaccccgtgtctaaagccatttgtcaccta
gcaactgtggactgcctgttctcattggcccaggtggccaaacaaggagactactgcaga
ccaactgtgcaagacaatcgtcgtgaaataatcataaaaaacgggaggcaccctgtgatt
gatgttctgctgggagagcaggaccagtatgtcccaaacaccaccagcctttcaggagat
ggtgaaagggtcatgataataactgggcccaacatgggagggaagagctcctacatcaag
caagtggcactgatcacagtcatggcacagatcggctctttcgtccctgcagaagaggcc
acagttggtgttgtggatggaatttttaccagaatgggcgctgcagacaacatctacaaa
ggccggagcaccttcatggaggagctgacagacactgccgagatcatccgaaaagccacc
tcgaggtcgctggtgatcctggacgagctgggccgagggacgagcactcacgatggcatc
gccatcgcctatgccaccctggagcatttcatcagggatgtgcaggccctgacgctgttt
gtcacccactacccctcggtgtgcgagctgcagcagcggtacccccgtgccgtgggcaat
taccacatggccttcctgctcagcgaggaggacgccggacagcacacgggatctgaagtg
gaagagaatcctgaatttatcactttcctttatcaaataactaaaggagtctctgcaagg
agttatgggctaaatgttgccaaactggcagatattcctgaagaaatcttgaagaatgca
gcttacaaatcaaaggagttggagagaatagtgaatatgaaaaggagaaagatgaagtcc
tttgctgaagcatggaagataaatgattctcaggaactacagaaatggaaaaatatgtat
gaacctaaggatgaaagaaaggacagtttttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (35)   

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