KEGG   Taeniopygia guttata (zebra finch): 100221971
Entry
100221971         CDS       T01082                                 
Symbol
VPS4B
Name
(RefSeq) vacuolar protein sorting-associated protein 4B isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03250  Viral life cycle - HIV-1
tgu04144  Endocytosis
tgu04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100221971 (VPS4B)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    100221971 (VPS4B)
  09143 Cell growth and death
   04217 Necroptosis
    100221971 (VPS4B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tgu04131]
    100221971 (VPS4B)
   03400 DNA repair and recombination proteins [BR:tgu03400]
    100221971 (VPS4B)
Membrane trafficking [BR:tgu04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    100221971 (VPS4B)
DNA repair and recombination proteins [BR:tgu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    100221971 (VPS4B)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 TIP49 RuvB_N AAA_16 AAA_14 IstB_IS21 AAA_22 AAA_5 AAA_25 AAA_18 AAA_2 ResIII nSTAND3 AAA_33 AAA_17 PhoH AAA_24 DUF815 RNA_helicase AAA_7 AAA_28 Mg_chelatase Parvo_NS1 NACHT USP8_dimer TPR_2 AAA_30 SRPRB AAA_19
Other DBs
NCBI-GeneID: 100221971
NCBI-ProteinID: XP_002199401
Ensembl: ENSTGUG00000002043
UniProt: H0YUZ8
Position
2:complement(60597704..60616358)
AA seq 441 aa
MAANTGNLQKAIDLASKAAQEDKAGNYEEAFRLYQHAVQYFIHVVKYEAQGDKAKQSIRA
KCGEYLDRAEKLKEYLKKREKTAPKPVKESGPAEGKGNDSDGEGESEDPEKKKLSNQLQG
AIVMEKPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKTY
LAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS
RSENESEAARRIKTEFLVQMQGVGVDNEGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE
DHARAAMFKLHLGSTPNDLKDSDYRELGKRTDGYSGADISIIVRDALMQPVRKVQSATHF
KKVKGPSVSDPNTMVDLFTPCSPGDPEATEMTWMEVPGDKLLEPRVSMADMLRSLASTKP
TVNEQDLEKLKKFTEDFGQEG
NT seq 1326 nt   +upstreamnt  +downstreamnt
atggcggccaacaccggcaacctgcagaaagcaatagaccttgctagcaaggcagcacaa
gaagataaagcaggaaactatgaggaagccttccgcttgtaccaacatgctgtgcagtat
tttatccatgttgttaaatatgaagcacagggtgataaagcaaaacaaagcattagagca
aaatgtggcgaatacttggaccgagcagaaaagctgaaagaatatctgaaaaagagagaa
aaaactgcaccaaaaccagttaaagagtctggtcctgctgaaggaaaagggaatgacagt
gatggggaaggagaatcagaggaccctgaaaaaaagaagctatcgaatcaacttcaagga
gcaattgttatggagaaaccaaatgtcaaatggagtgatgttgctggcctcgaaggtgcc
aaagaggcacttaaagaagcagtcatccttcccattaaatttccacacctgtttacaggc
aagagaacaccctggagaggaattctcctgtttggaccaccaggaacaggaaagacttat
ttagcaaaagctgtggcgacagaagcaaacaactctaccttcttctcagtatcttcatct
gaccttgtttcgaaatggttaggtgaaagtgaaaaattagtgaaaaacttgttccagctt
gccagagaaaacaaaccttctatcatcttcattgatgagatagattccctctgtgggtca
agaagtgaaaatgaaagcgaggctgctagacggataaaaacagaatttctagtccagatg
caaggggttggtgttgacaatgaaggaatcttggtcttaggagcaacaaacataccctgg
gttttggattctgctatcaggagaaggtttgagaagcgtatttatattcctttacctgaa
gaccatgccagggctgcaatgttcaaacttcaccttgggtcaactccaaatgacttaaaa
gactcagattatcgagagcttgggaagagaactgatggctattctggtgcagatataagc
atcattgtccgtgatgcactgatgcagcctgttagaaaagtgcaatcagcgactcacttc
aaaaaagtaaaaggaccatcagtgtctgatccaaatacgatggtagatttattcacccct
tgctctccaggtgatcctgaagccacagaaatgacatggatggaggtcccaggtgataaa
ttactggagcctagagtttccatggctgatatgctcaggtcgcttgctagcacaaaacca
acagttaatgaacaggacttggagaagttaaagaagtttacagaagactttggtcaggaa
ggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (32)   
   Pfam (32)   
All databases (62)   

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