KEGG   Taeniopygia guttata (zebra finch): 100222253
Entry
100222253         CDS       T01082                                 
Symbol
SSU72
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase SSU72
  KO
K15544  RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100222253 (SSU72)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tgu03021]
    100222253 (SSU72)
   03019 Messenger RNA biogenesis [BR:tgu03019]
    100222253 (SSU72)
Enzymes [BR:tgu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     100222253 (SSU72)
Transcription machinery [BR:tgu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     100222253 (SSU72)
Messenger RNA biogenesis [BR:tgu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     100222253 (SSU72)
SSDB
Motif
Pfam: Ssu72
Other DBs
NCBI-GeneID: 100222253
NCBI-ProteinID: XP_030145256
Position
21:complement(1717978..1737593)
AA seq 194 aa
MPSAPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTT
YDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCKDVFDLILTCEERVYDQVV
EDLNSREQETCQPVHVINVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFE
EKSGRTFLHTVCFY
NT seq 585 nt   +upstreamnt  +downstreamnt
atgccgtccgcgccgctccgcgtggccgtggtgtgctccagcaaccagaaccgcagcatg
gaggcgcacaacatcctcagcaaacgaggattcagcgtccgatcctttggcacagggact
cacgtgaaactgccaggaccagccccggacaagccaaatgtttatgacttcaaaacaaca
tatgatcagatgtacaatgatctgcttaggaaagacaaagaactatacacacagaatgga
attttacacatgttggacagaaataagagaatcaagccacgaccagaaagattccagaac
tgcaaagacgtttttgatttgatcctaacgtgtgaagaaagagtctatgatcaagtagta
gaagatctgaactcgcgggagcaggagacgtgtcagcccgtgcacgtcatcaacgtggac
atccaggacaaccacgaggaggccacgctgggcgccttcctcatctgcgagctctgccag
tgtatacagcacacagaagacatggaaaatgaaatagatgagctgttacaggaatttgaa
gagaaaagtggaaggacttttcttcatactgtctgcttttattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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