KEGG   Taeniopygia guttata (zebra finch): 100227810
Entry
100227810         CDS       T01082                                 
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
  KO
K08737  DNA mismatch repair protein MSH6
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    100227810 (MSH6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tgu03400]
    100227810 (MSH6)
DNA repair and recombination proteins [BR:tgu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     100227810 (MSH6)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I PWWP MutS_IV MutS_II MUM1-like_PWWP
Other DBs
NCBI-GeneID: 100227810
NCBI-ProteinID: XP_030124718
Position
3:complement(91045692..91060091)
AA seq 1417 aa
MRRSAIAERPSHGSFEPSQFCSSPGQRGRPGRARPSALPAKAGAGRGGAARGQRGFGAQG
GAVPAAAMSRQSTLLRFFPRAAPPPAAGSEPRSEPRRRSSGERNGLQAAGSPPGGAGRAA
ARRGENGEKGAGGGAAAKAPSVSCEYSPGDLVWAKMEGYPWWPCLIYNHPTERTILRGKG
KATRVHVQFFDDSPTRGWISVKYLKPYKGSSDGETMKGGMFYSTKPEIKRAMVLADDAMK
KDKIKRLELAVCNEPSDTEEEEEEIEEMSENASGNSEDCNSEEDVKSNKRLMSRERAVKT
KRRRVLDSDSDHDGSDVEFKPDGKEAASSEEASSGVDENESSDTETEAESVAESPIKVPA
KRKRREVKKPAKRSSLGNECSETPKRAATVSSEAKSKLTSFAAPESFESQANASSGGTGG
FSVWEHEKLDWLQEGKRRDAHRRRQGDPDYDPCTLYVPEDYLNKCTPGVRRWWQLKSQNF
DAVICYKVGKFYELYHMDAVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLVQKGYKVA
RVEQTETPEMMEARCKSKGQSTKFDKVVRREICRIITKGTQTYSVMDCDPSENHSKFLLS
VKEKEDSAGTRVYGVCFVDTSMGKFHVGQFPDDRHCSRFRTLVAHYTPVQVLFEKGNLSV
DTQKILKGSLVSCIQEGLTSGSQFWNASKTLKVLLEEGYFKEKQNSENGCSLPSVIKSLT
SESDSLGLTPGENSELALSALGGCVFYLKRCLIDQELLSQANFEEYVPVDIATAKDMSSS
SLFARTGQRMVLDGVTLMNLEVLQNGTNGSTEGTLLERIDSCCTPFGKRLLKQWLCAPLC
NPKSINDRLDAVEDLLAVPDKMSEVSEYLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAI
FYEELKYSKKKIADFLSTLEGFKIMNEIVEFMEEFASDFKSRVLKQLVTCKARNPDGRFP
DLSAELTRWDTAFDHNQARKTGVITPKLGFDPDYDRALEDIRALEEDLRRYLDKQRKLLG
SKSVQYWGTGKNRYQMEIPESVISRNLPEEYELRSSRKGYKRYWTKEIEKMLAAMVNAEE
RRDAALKDCMRRLFYNFAKNSKDWQTAVECIAVLDVLMSLAHYSQGGDGPLCRPEILLPR
DNARPFLELRNSRHPCITKTFFGDDFIPNDIVIGIKDEGSSSEASCVLVTGPNMGGKSTL
MRQAGLLVVMAQLGCYVPAEACRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQH
ATEHSLVLVDELGRGTATFDGTAIASAVVQELAERIQCRTLFSTHYHSLVEDYSHRGAVR
LGHMACMVENESEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAKEF
EKTTISLRIFRYLCQVVDGTTCDANAVRKLMAMIDRL
NT seq 4254 nt   +upstreamnt  +downstreamnt
atgcgaagatcagccatcgccgaacgtccttctcacggtagtttcgagccgtcccagttc
tgcagcagcccgggacaacggggacggccgggccgggcccgtccctcagcgcttcccgcc
aaagccggggcggggcggggcggggcggcgcgcgggcagcgcgggtttggcgcgcagggc
ggcgcggttcccgccgcggccatgtctcggcagagcaccctgctccgcttcttccccagg
gccgccccgccgccggcggccggcagcgagccccgcagcgagccccgccgccgctcctcg
ggggagcggaacgggctgcaggccgccggcagccccccgggcggggcgggccgagcggcg
gcgcggcgcggcgagaacggcgagaagggcgcggggggcggcgcggccgccaaggccccc
agtgtctcctgtgagtattctcctggggacttggtgtgggccaagatggagggttatccc
tggtggccatgtctcatatacaaccaccccactgaaagaacaattctcagaggaaaagga
aaagccactcgtgtccatgtgcagttctttgatgacagccctacaaggggttggatcagt
gttaaatacctgaagccatataaaggttcatccgacggggagacgatgaagggaggtatg
ttttacagcacaaagcctgaaattaaaagagccatggtgctggcagatgatgccatgaag
aaggataaaatcaagaggcttgaactggcagtatgcaatgagccttcagacacagaggag
gaagaggaagaaatagaggagatgagtgaaaatgcatcaggcaacagtgaagactgcaat
agcgaggaggacgtgaaaagcaataagcgactgatgagcagggagagagctgtaaaaacc
aagagaaggagagtgttggattctgacagtgaccacgatggctctgatgtggagttcaag
cctgatgggaaagaagcagcaagcagtgaggaagccagtagtggggtggatgaaaatgag
tcttctgacacagagacggaggcagagagtgttgcagagagccccataaaagtccctgct
aaacgaaagagaagagaggtgaaaaagcctgctaaaaggagtagcttgggaaatgaatgt
tctgaaacacccaaaagagcagcaacagtctcttcagaagccaagtctaagctgacatcg
tttgcagcacctgaaagttttgaatctcaagcaaatgcttccagtggaggcactggtggc
ttctcagtgtgggaacacgagaagcttgactggctgcaagaagggaagaggagagatgcg
cacaggaggcgtcagggtgaccccgattacgacccctgtactctgtacgtgcccgaggat
tacctcaacaagtgcacgccgggcgtgcgcaggtggtggcagctcaagagccaaaacttt
gatgctgtgatttgctacaaggtcggaaagttctatgagttgtatcacatggacgcagtc
accggcgtcaatgagctgggcctgatctttatgaagggcacctgggcccactcaggtttt
ccagaaactgcgtttggccgattctccgacgtcctggtgcagaagggctacaaggtggcg
cgcgtggagcagacggaaacgcctgaaatgatggaagcacgctgcaagtccaagggccag
tccaccaagtttgacaaggtggtgcgccgggagatctgcaggatcatcaccaagggaacc
cagacctacagtgtcatggactgcgacccctccgagaaccacagcaagttcctgctgtct
gtgaaggagaaggaggactcggccgggacgcgtgtctacggggtctgcttcgtcgacacc
tccatggggaagttccatgttggccagttcccggacgaccgccactgctccaggtttagg
actttggtagctcactacacccctgtgcaggtgctgtttgagaagggcaacctgtctgtg
gacacacagaagatactgaagggctcacttgtttcttgcattcaggaagggctgacctcg
ggttcccagttctggaatgcatctaaaacactaaaagtccttcttgaggaaggatatttc
aaggagaagcagaattctgaaaatggatgttctctgccctctgtaatcaaatctctgact
tcagagagtgactccctgggattaactcctggtgaaaacagtgaattagctttgtcagct
ctcgggggatgtgtcttctatctcaaaagatgtctgattgatcaggagctgttatcacag
gcaaacttcgaggaatatgtccctgtggatattgctactgcaaaagacatgagttcaagt
agtttgtttgccagaactggccagcggatggtgctggatggagtcaccctgatgaacttg
gaagtcctgcagaatggaaccaatggaagcacagaaggtactttgttggagaggattgat
tcttgctgtacaccatttgggaagcgactcctgaaacagtggctctgcgctccactttgt
aaccctaaatccatcaatgatcgtttggatgctgttgaggacctcctggcagtgccagat
aaaatgtctgaagtcagtgagtacctcaagaaactgcctgaccttgaaagactgctcagc
aaaattcacagcattgggtcaccactcaaaagtcagaaccatcctgacagcagggccatc
ttctatgaagaactcaaatacagcaaaaaaaaaattgctgactttctgtctaccctggag
ggattcaaaataatgaatgaaattgtcgaattcatggaggagtttgccagtgacttcaaa
tccagagtcctgaagcagctggtcacctgcaaagccagaaatcccgatggccgcttccca
gacctgagtgcagagctcacaaggtgggacactgcctttgatcacaaccaggctcggaag
acaggggtgatcacccccaagctaggttttgaccccgattatgacagagcactagaggat
atcagagctctcgaggaggatcttcggaggtacctggataagcaacgcaagctgctcggg
tccaaatccgtgcagtactgggggacaggcaagaaccggtaccagatggaaatcccagaa
agtgtcatatcccgcaacctgcccgaggaatacgagctgaggtccagcaggaagggctac
aagcgctactggaccaaggagatagagaagatgctggctgcgatggtgaatgccgaggag
cgccgtgacgccgccctcaaggactgcatgaggcgcctcttctacaactttgccaagaac
agcaaggactggcagacagctgtggagtgcattgctgtgctggatgtcttgatgtccctt
gctcactacagtcaaggtggtgatggacctctgtgccgacctgaaatcctgctgccaagg
gataatgctcgtcccttcctggaacttagaaattcccgccatccatgcatcacaaaaact
ttctttggggatgattttattcccaatgacatcgtgataggcatcaaggatgaaggcagc
agcagtgaggcctcctgtgtgctggtaactggcccaaacatgggtggcaaatctactctc
atgagacaggctggtctcctggtggtcatggcccagctgggctgctacgtgcccgcggaa
gcctgcaggctcacacccatcgaccgcgtgttcacgcggctcggcgcctccgacaggatc
atggctggtgaaagtaccttctttgttgaattgagcgagacttccagcattctgcagcat
gcaacagagcattcccttgttctcgtggatgaactgggcagaggcacggccacgtttgat
ggcacagccatagcgagcgccgtggtgcaggagctggccgagaggatccagtgccggacg
ctgttctccactcactaccactccctggtggaggattattcccaccgcggggccgtgcgc
ctgggccacatggcatgtatggttgaaaatgagagtgaggatccaagccaggaaacaatt
acgttcctgtacaagttcattgaaggagcctgcccaaagagctatggcttcaatgcggca
agacttgcagatattccagaagaagtcattcagaaggggcacagaaaagccaaagagttt
gaaaaaacaaccatctcactgagaatatttaggtacctgtgccaggtggtggatggaaca
acatgtgatgcaaatgcagttcggaaactcatggcaatgattgaccggctttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (45)   

Download RDF
DBGET integrated database retrieval system