KEGG   Taeniopygia guttata (zebra finch): 100228377
Entry
100228377         CDS       T01082                                 
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X3
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
tgu  Taeniopygia guttata (zebra finch)
Pathway
tgu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tgu00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100228377 (COL11A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:tgu00536]
    100228377 (COL11A1)
Glycosaminoglycan binding proteins [BR:tgu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100228377 (COL11A1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 100228377
NCBI-ProteinID: XP_002186777
Ensembl: ENSTGUG00000004859
Position
8:complement(19405778..19538129)
AA seq 1807 aa
MEMQRWSTRWKTRRWPWDSAVTVLITFAFLLRAAEVRGAEPVDVLKALEFHNSPEGVTRT
AGFCTNRRNSKGSDVAYRVSKTAQLSAPTKQLYPGGGFPEDFSILMTVKPKKGIQSFLLS
IYNEQGIQQVGVEVGRSPVFLFEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKSVT
MIVDCNKKATKPLDRSDKTVVDTNGITVFGTRILDEEVFEGEIQQLLIIADPRAAFDYCE
HYSPDCDSPVPNAAQAQDPRVDEYTPEDFIEYDYEYGDADYKETDSVTEGLPLFEETVAQ
TEANVIDGFQDYRIAENDYGPQTEAPSRATEANEQNPVEEVFAEEYITGEDFDKKTEATE
YGSRGVDLSESDLLVDGDLGEYDFYEYKEYEEKPTDSTNEEFGPGVPAETDITETSVTGH
GAYGEKGQKGEPAVIEPGMLIEGPPGPRGPVGHTGPPGLQGPVGPPGDPGERGPPGRPGL
PGADGLAGPPGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGR
PGPVGGPGAAGAKGESGEPGPQGPRGVQGAPGPSGKAGKRGRPGADGARGMPGEPGAKGD
RGFDGLPGLPGDKGNRGDRGPQGPPGLPGEDGSRGEDGEVGPRGLPGEAGPRGLLGPRGT
PGPPGQPGIAGIDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGK
PGLPGLPGSDGPPGHPGKEGQSGDKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGE
KGEDGFPGFKGDMGLKGDRGEIGQPGPRGEDGPEGPKGRSGPSGDPGAAGPAGEKGKLGV
PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGK
PGPKGTSGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK
TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGVPGK
DGPAGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGPMGSPGERGAAGTAGPIGLPGRPGP
QGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPSGSPGEDGDKGEIGEPGQKGS
KGDKGDNGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGL
QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGE
AGNPGPPGESGTAGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP
PGEPGPAGQDGGGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGATGAEGRQGEKGA
KGEPGAEGAPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGMPGAPGQGGPPGPLGPPGL
PGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGP
PGPPGLPGPQGPKGSKGSSGPAGQKGDNGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPD
YMQSDAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQNNPARTCKDLQLCHPDFPD
GEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGK
LLSYLDVEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDAPSDSYDKALRFLGSND
EEMSYDNNPYIKALHDGCASRKGYAQTVLEINTPKIDQVPIVDVMINDFGDQNQKFGFEV
GPVCFLG
NT seq 5424 nt   +upstreamnt  +downstreamnt
atggagatgcagagatggtccacaaggtggaaaacgagaaggtggccctgggactcggct
gtaaccgtgctcatcaccttcgctttccttctccgggctgcagaggtcagaggagctgaa
cccgttgatgtgctaaaagcattagaatttcacaattctccagaaggagtaacaagaaca
gcaggattttgcacaaacagaaggaattccaaaggatcagatgttgcttacagggtttca
aaaactgcacagctgagtgccccaacaaagcagctgtacccaggtggaggttttccagaa
gatttttcaatattaatgacagtaaaacctaaaaagggtattcagtctttccttttgtct
atctacaatgaacaaggaattcagcaagtaggtgttgaagtaggtagatcccctgtcttc
ctattcgaagaccaaaatggaaaacctgccccagaagactatcctcttttcagaacagtc
aacattgctgatggcaagtggcatcgagtagctatcagtgtggagaaaaagagtgttaca
atgattgttgactgtaacaaaaaagctacaaaaccgcttgaccgaagtgacaaaacagtt
gtggacaccaatggcatcactgtctttggaaccaggattctggatgaagaagtttttgag
ggtgagatccagcagctgttgattatagctgatcccagagctgcatttgactattgtgag
cattatagcccagactgtgactccccagtgcccaatgctgctcaggctcaagatcctcga
gttgatgagtacacaccagaagattttatcgaatatgactatgagtatggggatgcagat
tataaagaaactgattctgtaacagagggactcccactgttcgaagagacagtagcacaa
acagaggccaacgttattgatggatttcaagattatagaatagctgaaaatgactatggg
ccccagacagaagctccctccagagctacggaagcaaatgagcaaaatcctgttgaagaa
gtatttgctgaagaatacataactggagaggattttgataaaaaaactgaggcaactgaa
tatggaagcagaggagtagacctcagtgaatctgatctgctggtagatggagatttagga
gaatatgatttttatgaatataaagaatatgaagagaaaccaactgattccactaatgag
gagtttggtccaggtgttcctgcagagaccgatatcacagaaacaagcgtgacaggacat
ggggcttatggagaaaaaggccagaagggagagccagctgtgattgaacctggtatgctc
attgaaggaccaccgggaccaagaggacctgttggtcatacaggtcccccaggtttacaa
ggtcctgttggtcctccaggtgaccctggtgaaaggggtccacctggtcgccctggtctt
cctggtgctgatggtttagcaggtcccccaggtaccatgttaatgttgccgttccgcttt
ggaggagatggtgagaagggcccaacaatctcagctcaggaagctcaagcacaagctatt
cttcagcaagctaggattgctatgagaggtccacctggtcctatgggactcactggaaga
ccaggtcctgtgggcggacctggagcagcaggtgctaaaggtgaaagtggtgaaccaggc
ccccagggtcctcgtggtgtccaaggtgcccccggtccaagtggaaaagctggcaaaagg
ggacgtcctggagctgatggtgccagaggaatgccaggagaacctggtgcaaagggtgac
agaggatttgatggtcttcctggcctccctggtgacaaaggtaaccggggagaccgtggc
ccacagggacctcctggcttacctggtgaagatggatcaagaggagaagatggggaagtt
ggaccaagaggtctcccaggtgaagctggtccacggggattactgggccccagaggaaca
cctgggccccctggacaacctggcattgcaggtattgatggaccttcaggcccaaaggga
aacatgggtcctcaaggggaaccaggacctcctggtcagcaaggaattccaggcccacaa
gggcttcctggtcctcaaggtcctattgggcctcctggtgaaaaagggccacaaggcaag
cctggccttcctggccttcccggttctgatgggcctcctggtcaccctgggaaagagggt
cagtctggagataaaggtgcattggggcctccaggtcctcagggtcctattggatatcca
ggtcctcgtggtgtaaagggtgctgatggtgtacgtggactcaagggatccaaaggtgaa
aagggtgaagatggttttccaggatttaaaggtgacatgggtcttaaaggtgaccgggga
gaaattggtcagccaggtccacgaggagaagatggcccagaaggtccaaaaggtcgatca
ggtccatctggggacccaggtgctgctggtccagctggggaaaagggcaagcttggcgta
cctggactgccaggatatccaggaagacaaggtccaaagggctcaactggtttcccagga
tttccaggtgccaatggagagaaaggtgcaaggggattgcatggcaaaccaggccccaga
ggacagcgaggaccaacaggtccaagaggctcaagaggtcccagaggtcccactggtaaa
ccaggtccaaagggcacttcaggcaatgatggtcctcctggcccaccaggcgaaagggga
ccgcaagggcctcaggggcctgttggattccccggaccaaagggacctccaggtccacct
ggaaaagatggcttgcctgggcacccaggacagcggggtgagactggttttcaaggaaaa
actggtcctcctggtcctggtggtgttgttggccctcagggtcctactggtgagactgga
ccaattggtgaaagaggccatccaggtcctcctggtcccccaggtgaacaaggcctccca
ggtgctgcaggaaaagaaggtgctaagggtgatccaggccctcaaggcgttcctgggaaa
gatggaccagcaggtcttcgtggtttccctggagagagaggccttccaggtgctcagggt
ccagctggtctgaaaggaggggaaggcccacagggtccacctggcccaatgggctcgcca
ggagagcgcggcgccgcgggcaccgctggccccatcgggctgccaggccgtcccggccct
caggggcctccgggccccgccggagagaagggtgctcccggtgaaaaaggtccccaaggt
ccagctggacgtgatggaatacagggtcctgtaggacttcctggtcctgctggtcctagt
ggttctcctggagaagatggcgacaagggtgaaattggtgaaccaggtcagaaaggtagc
aagggtgacaaaggagataacggtcctccgggtccaccaggtctgcagggtcctgttgga
gccccagggatagctggaggtgatggagagccaggcccaagaggtcagcaagggatgttt
gggcaaaaaggtgacgaaggtcctcgaggcttccctgggcccccaggtcctattggatta
cagggtctgcctggcccaccaggtgaaaaaggtgaaaacggagatgtgggcccaatgggt
ccacctggcccaccaggtccaagaggtccccagggtcctaatggagccgatggtcctcaa
ggtcccccaggctcaatcggctctgttggaggtgttggtgaaaagggtgagcctggagaa
gctggtaaccctggaccacctggagaatctggaacagctggtccaaaaggtgaaagggga
gaaaaaggtgaagctggtccacctggagcagccggaccaccaggtgctaaaggacctcca
ggtgatgatgggcctaagggtaacccaggcccagttggttttcctggagatcctggtccc
cctggggaacctggtccagctggtcaggatggtggtggtggagagaaaggtgaagatggt
gatcctggtcaacctggtccaccaggtccttcaggtgaagctggcccacctggtcctcct
gggaaaagaggacctcctggagcaacaggagctgaaggcagacaaggtgaaaaaggtgca
aagggtgaacctggtgcagaaggggctcctggaaaaacagggccagttgggccacaggga
cctgcaggaaaacctggcccagagggtctccggggcattcctggccctgtgggagaacaa
ggtatgcctggagccccaggtcagggtggccctccaggacctctgggcccacctggcttg
cctggactgaaaggagacccaggttccaaaggagagaagggacatcctggcttgattggc
ctgattggacctccaggagaacagggtgaaaagggtgatcggggtcttcctggcccacag
ggatctcctggagccaagggtgatgcaggaatttctggtcctgctggtccccttggaccc
cctggtcctcctggattacctggtccccagggtcccaaaggttccaaaggatccagtggt
cctgctgggcagaagggtgacaatggcttacctggtccacctggtcctccaggtcctcca
ggtgaggtaatccagccactgccaatccagtcacccaagaagacaagaagatctcctgac
tatatgcaatctgatgctggtgataatattctggattattctgatggcatggaggagatc
tttggctccctgaattctctgaagcaagacattgaacacatgaagtttcccatgggcact
cagaataacccagcccggacctgcaaagatctgcagctctgccaccccgacttcccagac
ggggaatattggattgatcctaaccagggctgttctggagactccttcaaagtatactgc
aatttcacagcaggtggggaaacttgcatctacccggataagaaatctgaaggagttaga
atttcatcatggccaaaggagaatccaggatcttggtttagtgaatttaagcgaggaaaa
cttctttcctatttggatgttgaaggcaattccattaatatggtccaaatgacattcctt
aaactactgagtgcctctgccagacaaaatttcacttacaactgtcaccaatctgtggcc
tggcacgacgcaccctctgacagctatgacaaagcactaaggttcttaggatccaatgat
gaagaaatgtcttatgacaacaatccttacatcaaagctctccacgatggctgtgcatca
agaaagggctatgcacagacggtgctggaaatcaacacacccaaaatagaccaagtgccc
atagttgatgtgatgatcaatgactttggtgatcagaaccagaagtttggatttgaggtc
ggtcctgtctgcttccttggttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (46)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (61)   

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