KEGG   Thermococcus sp. 4557: GQS_04310
Entry
GQS_04310         CDS       T01588                                 
Name
(GenBank) nonsense-mediated mRNA decay protein
  KO
K07562  60S ribosomal export protein NMD3
Organism
the  Thermococcus sp. 4557
Brite
KEGG Orthology (KO) [BR:the00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:the03009]
    GQS_04310
Ribosome biogenesis [BR:the03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    GQS_04310
SSDB
Motif
Pfam: NMD3 HTH_32 EFP Endonuclease_7
Other DBs
NCBI-ProteinID: AEK72763
UniProt: G0HPE4
Position
complement(827036..828202)
AA seq 388 aa
MSERFCYRCGISESEGGPLIDGLCQVCFRKENPVLLIENEVNTELCQNCGSYRKRGVWVD
PASYDLEELIFEVAENALMEALEDSFSEKIVEYEMVSPEELDEIDELPVGRAAVAFEPAD
FHLEHFPAIVAYAVRVKARIHELQRELHDETKHVTVYVRQTVCPRCSKFLGGYFEAILQV
RAEGRPLTEEERKAIGKLVEEKVDEIMRRDRMGFIQDTIEKEEGMDFYMGSTSSARKLAQ
AIKERFGGTISEAYELVGVDRQTSKEVHRASVSIRIPKFQRGDLVMDRRGNVYTVEGVDG
KGMTLTNLVTRETERRDWKTVKREGIDAVEGERKEAMVTSITPTEVQLMDMETYETYELE
KPRMELREGEVYRMVEVKGRKYFLDRKE
NT seq 1167 nt   +upstreamnt  +downstreamnt
atgagcgagagattctgctacaggtgcgggataagcgagagcgaaggggggccgctgata
gacgggctctgccaggtctgcttcagaaaggagaacccggttttgctgattgagaatgag
gtcaacacggagctctgccagaactgcgggagctacagaaagaggggcgtctgggttgat
ccggcgagctatgaccttgaggagcttatattcgaagtggccgaaaacgccctcatggag
gccctcgaggattccttcagcgagaaaatcgtggagtacgagatggtctccccggaggaa
cttgacgaaattgacgagcttcctgttggacgggccgcggtggcctttgaacccgctgat
tttcaccttgaacactttccggcgatagtggcctatgcggtccgtgtaaaagccaggatt
cacgagctccagcgcgagctccacgacgagaccaaacacgttaccgtctatgtccgccag
accgtctgtccgcgctgttccaagttcctcggcggctacttcgaggccatactccaggtc
cgtgccgagggcaggccgctgactgaggaggaaagaaaggccataggaaagctcgtcgag
gagaaggtggacgagataatgcgcagggacaggatgggcttcatccaggacaccatagag
aaggaggagggcatggacttctacatgggctctacttcaagtgccagaaagctcgcccag
gcgataaaggagcgcttcgggggcacgataagcgaggcctacgagctggtcggcgttgac
agacagaccagtaaggaggttcaccgcgcgagcgtgagcatcaggattccgaagtttcag
aggggtgacctggtgatggacaggcgcggcaacgtttacaccgtggagggcgtggacgga
aagggtatgacgctcaccaacctggtcacccgtgagacggagcgccgcgactggaagacc
gtgaagcgggagggcatagatgcggtggagggcgaaagaaaggaagccatggtgaccagt
ataactccgaccgaggtccagctaatggacatggagacgtatgaaacctatgagctggag
aagccgcgcatggagctcagagaaggcgaagtctatcgcatggtggaggttaagggcaga
aaatacttcctggaccggaaggaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (11)   

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