KEGG   Thermosynechococcus sp. CL-1: FFX45_01715
Entry
FFX45_01715       CDS       T06232                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
thec  Thermosynechococcus sp. CL-1
Pathway
thec03030  DNA replication
thec03410  Base excision repair
thec03420  Nucleotide excision repair
thec03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:thec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FFX45_01715 (ligA)
   03410 Base excision repair
    FFX45_01715 (ligA)
   03420 Nucleotide excision repair
    FFX45_01715 (ligA)
   03430 Mismatch repair
    FFX45_01715 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:thec03032]
    FFX45_01715 (ligA)
   03400 DNA repair and recombination proteins [BR:thec03400]
    FFX45_01715 (ligA)
Enzymes [BR:thec01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     FFX45_01715 (ligA)
DNA replication proteins [BR:thec03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     FFX45_01715 (ligA)
DNA repair and recombination proteins [BR:thec03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     FFX45_01715 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FFX45_01715 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     FFX45_01715 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      FFX45_01715 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT PTCB-BRCT DNA_ligase_ZBD BRCT_2 HHH
Other DBs
NCBI-ProteinID: QEQ00220
UniProt: A0A5C2M7G6
Position
349853..351925
AA seq 690 aa
MVSKEPPMTTAAERIQQLRHLLQRASYAYYALDQPIMEDEVYDQLYRELQELEAAHPEYI
TPDSPTQRVGEAPVSQFESVSHRIPLYSLENAFTFADMVAWQERWQRYWRSLRREEPIPP
TEYVCELKMDGVALALTYENGLLVRGATRGDGQRGEDITSNVRTIRTIPLRLAVENPPPI
VEVRGEAFLPLARFHQLNQERQAQGEAPFANPRNAAAGTLRQLDPRIVAQRQLDFFAYAL
HLPEGGSVPLGEHQAGEPQSQRQVLNALQRLGFRVNPHNADCPDLEAVKAYYDHWQTARH
QLPYLTDGIVVKLNDLTLQQALGFTQKFPRGCIAWKYEPEQAITDVVTITVQVGRTGALT
PVAELVPVQLVGTTVSRATLHNADYIAELDLHIGDKVVIHKAGEIIPEIVRVFPELRSPT
AQPFTMPTVCPECHQPVVRPANEAVSRCVNPRCPAIVRGQILHWASRDALDIQGLGEKLV
QQLVAKELVHTPADLYRLTAAQLLRLERMGQKSAAKLLQAIADSKEQPWPRVLYGLGIRH
VGSVNAQVLADQFKSVEELAAATVADLCGVYGIGEEIAQAVHEWFQDPAHQTLIADLKAL
GLQLAAAIATAPTTGQPLAGKRFVITGTLPSLTREAAKTLIQQHGGQVSESVSRQTDYLV
VGEKAGSKLRRAQELGIPCISETELIEMCR
NT seq 2073 nt   +upstreamnt  +downstreamnt
atggtctcgaaggaacccccgatgacaacagcagccgaacggattcaacaactgcggcac
ctgcttcagcgtgcgagctacgcctactatgccctcgatcagccgatcatggaagatgaa
gtctatgaccagctctatcgcgaactgcaggaactcgaagcggctcatcctgagtacatc
acccccgacagccctacccagcgggtcggcgaagctcccgtcagtcaatttgagagtgtc
agccatcgcattcccctctatagcctcgaaaatgcctttacctttgccgatatggtggcg
tggcaggaacgctggcagcgctattggcgtagcctacggcgagaggagccaattcccccg
acggaatatgtctgcgaactcaaaatggatggcgtggcccttgctttgacctatgaaaac
gggttattggtgcggggggcaactcggggcgatggccaacgcggtgaggatattaccagc
aatgtgcgcacgattcgcaccattcccctgcggctagccgtcgagaacccaccaccaatc
gttgaagttcgtggggaagcttttttgcctttggcgcgattccatcaactcaaccaagaa
cgccaagcccaaggagaagctccctttgctaatccccgtaatgccgccgccggtactctc
cgtcaactggatccgcgcattgttgcccaacgccaactggacttctttgcctatgcgctg
catttacctgaagggggtagcgttcccttgggtgagcaccaagcaggggaaccccaatcg
cagcggcaagtgctcaatgcgctgcaacgccttggctttcgggtcaatccccacaatgcc
gactgccctgacctagaggcggtgaaagcctactacgaccactggcaaactgcacgccac
caactgccctatctgaccgatggcattgtggtcaagctcaatgatttaacgctgcaacag
gctcttggctttacgcaaaagtttccccgaggttgtattgcttggaagtatgaaccggaa
caggcgattaccgatgtggtgacaattacggttcaggtgggacgcacgggtgcgctcacc
ccagtcgctgaactggtgccagtgcaattagtgggtaccacggtatcacgggcaacgctg
cacaatgcagactacattgccgaattggatttgcacattggcgataaggtggtgatccac
aaagccggcgaaatcattccagagattgtgcgggtctttcccgaattgcgatcgccaacg
gctcaaccctttacgatgcccaccgtgtgtcctgaatgtcatcagccggtggtgcgccct
gccaacgaagctgtgagtcgctgtgtcaatccgcggtgtccggcgatcgtgcgcggccaa
atcctccactgggcaagtcgggatgccttggatattcaagggttaggggaaaagctagta
cagcaattggtggccaaggagttggtgcacaccccagcggatctctatcgcctgacggca
gcacaactgttgcgccttgagcgcatgggtcaaaagtccgctgctaaattgttgcaggcg
atcgccgactcgaaagaacaaccgtggccacgggtgctctatggcctaggcatccgccat
gtggggagtgtcaatgcccaagtgcttgccgatcaattcaagtctgttgaggagctggcc
gctgctaccgtcgccgatctgtgtggggtctatggcattggtgaggaaattgcccaagcg
gttcacgagtggttccaagacccagcgcaccaaaccctcattgctgatctcaaagccttg
gggctacaactggcggcggcgatcgccactgcaccaacgactgggcaaccccttgcgggc
aaacgttttgtgattacaggcaccctacccagcctcacccgtgaagcagccaaaacgctg
atccagcaacatggcggtcaagtgagtgagagtgtcagtcggcaaacggattatctagtg
gtgggcgaaaaagcggggagtaaactgcgacgcgctcaagaattgggcatcccctgcatc
agtgaaacagaacttatagaaatgtgtcgttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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