KEGG   Thermosynechococcus sp. CL-1: FFX45_04915
Entry
FFX45_04915       CDS       T06232                                 
Name
(GenBank) RNA-binding protein hfq
  KO
K03666  host factor-I protein
Organism
thec  Thermosynechococcus sp. CL-1
Pathway
thec02024  Quorum sensing
thec03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thec00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FFX45_04915
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    FFX45_04915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thec03019]
    FFX45_04915
   03036 Chromosome and associated proteins [BR:thec03036]
    FFX45_04915
Messenger RNA biogenesis [BR:thec03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     FFX45_04915
Chromosome and associated proteins [BR:thec03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    FFX45_04915
SSDB
Motif
Pfam: Hfq
Other DBs
NCBI-ProteinID: QEQ00780
UniProt: A0A5C2M997
Position
966906..967124
AA seq 72 aa
MTDEFNTALPSIRQLQTFIKDSTEVEVKLSTSDLVVGKVRWQDMNCLCVVDHYDQPTIIW
KQAIVFIKPKLA
NT seq 219 nt   +upstreamnt  +downstreamnt
atgaccgacgaattcaatacggcactgcccagcattcgccagttgcagaccttcattaaa
gatagcaccgaggttgaagtcaagctcagcaccagtgatctcgtggttggtaaggtgcgc
tggcaggatatgaattgcctctgcgttgtcgatcactatgatcaacccaccattatttgg
aagcaggccattgtctttattaaacccaagctagcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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