KEGG   Thermomonas sp. HDW16: G7079_10500
Entry
G7079_10500       CDS       T06498                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
theh  Thermomonas sp. HDW16
Pathway
theh02024  Quorum sensing
theh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:theh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    G7079_10500 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    G7079_10500 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:theh03019]
    G7079_10500 (hfq)
   03036 Chromosome and associated proteins [BR:theh03036]
    G7079_10500 (hfq)
Messenger RNA biogenesis [BR:theh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     G7079_10500 (hfq)
Chromosome and associated proteins [BR:theh03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    G7079_10500 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: QIL21123
UniProt: A0A6G7ZWC8
Position
complement(2240947..2241204)
AA seq 85 aa
MSKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGTVESFDQFVILLRNTVSQMVYKHAIS
TVVPARNVRVGPTGTDADDEAADEA
NT seq 258 nt   +upstreamnt  +downstreamnt
atgtccaaggggcagtctttgcaggatccattcctgaacgcattgcggcgcgaacgcgtg
ccggtctcgatctacctggtcaacggcatcaagctgcagggcacggtcgaatccttcgac
cagttcgtgatcctgttgcgcaacacggtcagccagatggtctacaagcacgcgatctcc
accgtggtgccggcgcgtaacgtgcgcgtgggcccgaccggcaccgacgcggacgacgaa
gccgctgacgaggcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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