KEGG   Thermomonas aquatica: FHQ07_04890
Entry
FHQ07_04890       CDS       T06025                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
thes  Thermomonas aquatica
Pathway
thes03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:thes00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FHQ07_04890 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:thes03021]
    FHQ07_04890 (rpoB)
   03400 DNA repair and recombination proteins [BR:thes03400]
    FHQ07_04890 (rpoB)
Enzymes [BR:thes01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     FHQ07_04890 (rpoB)
Transcription machinery [BR:thes03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     FHQ07_04890 (rpoB)
DNA repair and recombination proteins [BR:thes03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      FHQ07_04890 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 DOCK-C2
Other DBs
NCBI-ProteinID: QDA56701
UniProt: A0A5B7ZNH6
Position
complement(1009454..1013617)
AA seq 1387 aa
MTTATQQYSFTEKKRIRKDFGKSRSILEVPFLLAIQVDSYREFLQEHAEPSKRADRGLHA
ALKSVFPISSYSGNAALEYVGYKLGEPLFDERECRNRGLSYGAPLKVTVRLVIYDRESST
KAIKYVKEQEVYMGEIPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLL
FSARVIPYRGSWLDFEFDPKDALFTRIDRRRKLPVSVLLRALGYNNEEMLNEFFDINTFH
IEAEGVQLELVPERLRGETLDFDLADGDKVIVEAGKRITARHVKQLEAAGVSALAVPDSY
IAGRILSHDVIDPKTGELLASANDEINDDILGKLRKAGIASVGTLWVNDLDRGAYLSNTL
RIDGTKTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSSVGRMKFNRRIGR
DSVTGAPVLYDAKYFADRKDEESVRLRNECGAGSDILDVIKVLTEIRNGRGVVDDIDHLG
NRRVRSVGEMAENVFRVGLVRVERAVKERLSMAEADGLSPQDLINAKPVAAAIKEFFGSS
QLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNI
GLINSLAVFARTNKYGFLETPYRKVVDGKVTDEIEFLSAIEEVGKVIAQANAPRDGKGNI
TAQFVACRFNGENELRPPSEVQFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQA
VPTLKSQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAGRIVVKVNEAEISGEHDAGV
DIYTLIKYTRSNQNTCINQTPLVNVGDVVARGDVLADGPSTDIGELALGQNMLIAFMPWN
GYNFEDSILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDES
GVVYIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTV
IDVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILESAIYARLRETLLGKTANGGP
GVKKGDSVSSLVLDGLKKSDWLQLRMKDDDANDAIERAAKQLDAHRKEFDKRFDDKRGKI
TQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSTIVPVEDMPYMANGETVDI
VLNPLGVPSRMNIGQVLEVHLGWAAKGLGQKIQRMLDAQAKIADLRKFLDEIYNHDTSTH
AHRVDLKQFSDAELLTLAQNLTDGVPMATPVFDGAAEAEIKKMLELAELPLSGQTVLHDG
RTGEAFEREVTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAI
NMELEEH
NT seq 4164 nt   +upstreamnt  +downstreamnt
atgactaccgccacccagcagtattcgttcaccgagaagaagcgcatccgcaaggacttc
ggcaagagccgttcgatcctggaagtgccgttcctgctcgccatccaggtcgactcctac
cgcgagttcctgcaggagcacgccgagccgtccaagcgcgccgaccgcggcctgcacgcc
gcgctgaagtcggtgttcccgatcagcagctacagcggcaacgccgcgctggaatacgtc
ggctacaagctcggcgagccgctgttcgacgagcgcgaatgccgcaaccgcggcctgagc
tacggcgccccgctgaaggtgaccgtgcgcctggtgatctacgaccgcgagtcgtcgacc
aaggcgatcaagtacgtgaaggagcaggaggtctacatgggcgagatcccgctcatgacc
gacaacggcaccttcatcgtcaacggcaccgagcgcgtcatcgtctcccagctgcaccgc
tcgccgggcgtgttcttcgaccacgaccgcggcaagacgcatagcagcggcaagctgctg
ttctccgcgcgcgtgatcccgtaccgcggctcctggctggacttcgagttcgacccgaag
gacgcgctgttcacccgcatcgaccgccgccgcaagctgccggtgtcggtgctgctgcgc
gcgctcggctacaacaacgaagagatgttgaacgagttcttcgacatcaacaccttccac
atcgaagccgaaggcgtgcagctggagctggtgcccgagcgcctgcgcggcgagaccctg
gacttcgacctggccgacggcgacaaggtcatcgtcgaggccggcaagcgcatcaccgcg
cgccacgtgaagcagctcgaagccgccggcgtgtccgcgctggcggtgccggacagctac
atcgccggccgcatcctctcgcacgacgtgatcgacccgaagaccggcgagctgctggcc
tcggccaacgacgagatcaacgacgacatcctgggcaagctgcgcaaggccggcatcgcc
agcgtcggcaccctgtgggtgaacgacctcgaccgcggcgcctacctgtccaacaccctg
cgcatcgacggcaccaagacccaactggaagcgctggtcgagatctaccggatgatgcgc
ccgggcgagccgccgaccaaggacgccgcgcagaacctgttccacaacctgttcttcacc
ttcgagcgctacgacctgtcctcggtcggccgcatgaagttcaaccgccgcatcggtcgc
gacagcgtcaccggcgcgccggtgctgtacgacgccaagtacttcgccgaccgcaaggac
gaggaatccgtgcgcctgcgcaacgagtgcggcgcgggctccgacatcctcgacgtgatt
aaggtgctgaccgagatccgcaacggccgcggcgtggtcgacgacatcgaccacctcggc
aaccgccgcgtgcgttcggtcggcgaaatggccgagaacgtgttccgcgtgggcctggtc
cgcgtcgagcgcgcggtcaaggagcgcctgtcgatggcggaggccgacggcctgtcgccg
caggacctgatcaacgccaagccggtggccgccgcgatcaaggagttcttcggctcctcg
cagctgtcgcagttcatggaccagaacaacccgctgtcggaagtgacccacaagcgccgc
gtgtccgcgcttggcccgggcggcctgacccgcgagcgcgccggcttcgaagtgcgcgac
gtgcacccgacccactacggccgcgtctgcaccatcgagacgccggaaggcccgaatatc
ggcctgatcaactcgctggcggtgttcgcccgcaccaacaagtacggcttcctggagacg
ccgtaccgcaaggtggtggacggcaaggtcaccgacgagatcgagttcctgtcggcgatc
gaggaagtgggcaaggtcatcgcccaggccaatgcgccgcgcgacggcaagggcaacatc
accgcccagttcgtggcctgccgcttcaacggcgaaaacgaactgcgtccgccaagcgaa
gtgcagttcatggacgtcagcccgatgcagaccgtgtcggtcgcggcggcgctggtgccg
ttcctggagcacgacgacgccaaccgtgcgctgatgggcgcgaacatgcagcgccaggcg
gtgccgacgctgaagtcgcagaagccgctggtcggcaccggcatcgagcgcgcggtggcg
cgcgactcgggcgtgaccgtgaacgcgcgccgcggcggcgtgatcgagcagatcgacgcc
ggccgcatcgtggtcaaggtgaacgaggcggagatctccggcgagcacgatgccggcgtc
gacatctacaccctgatcaagtacacgcgttccaaccagaacacctgcatcaaccagacc
ccgctggtgaacgtgggcgacgtggtcgcgcgcggcgacgtgctggccgacggcccctcg
accgacatcggcgagctggccctgggccagaacatgctgatcgccttcatgccgtggaac
ggctacaacttcgaagactccatcctgctcagcgagcgcgtggtggaggaggatcgctac
accacgatccacatcgaggagctgacctgcgtcgcccgcgacaccaagctcggcccggag
gaaatctccgcggacatccccaacgtctccgagcaggcgctgaaccgcctcgacgagagc
ggcgtggtgtacatcggcgccgaagtgcgcgccggcgacatcatggtcggcaaggtcacg
ccgaagggcgagagccagctgaccccggaagagaagctgctgcgcgcgatcttcggcgag
aaggcctccgacgtgaaggacagctcgctgcgcgtgccgccgggcatggacggcaccgtg
atcgacgtgcaggtgttcacccgcgacggcatcgagaaggacaagcgcgcgcgccagatc
gaggaatccgagatcaagcgcgtcaagaaggacttcgacgaccagttccgcatcctcgag
tcggcgatctacgcgcgcctgcgcgagaccctgctgggcaagaccgccaacggcggcccg
ggcgtcaagaagggcgacagcgtgtcctcgctggtgctggacggcctgaagaagtccgac
tggctgcagctgcggatgaaggacgatgacgccaacgacgcgatcgaacgcgccgccaag
cagctcgacgcgcaccgcaaggagttcgacaagcgcttcgacgacaagcgcggcaagatc
acccagggcgacgacctcgccccgggcgtgctgaagatggtcaaggtgttcctggcggtg
aagcgccgcatccagccgggcgacaagatggccggccgccacggcaacaagggcgtggtc
tcgacgatcgtcccggtcgaggacatgccgtacatggccaacggcgagaccgtcgacatc
gtgctgaacccgctgggcgtgccgtcgcgcatgaacatcggccaggtgctggaagtccac
ctgggctgggccgccaagggcctgggccagaagatccagcgcatgctcgatgcacaggcc
aagatcgccgacctgcgcaagttcctcgacgagatctacaaccacgacaccagcacccac
gcccaccgcgtcgacctcaagcagttcagcgacgccgaactgctgaccctggcgcagaac
ctcaccgacggcgtgccgatggccaccccggtgttcgacggcgcggccgaggccgagatc
aagaagatgctcgagctcgccgagctgccgctgtccggccagaccgtgctgcacgacggc
cgcaccggcgaggcgttcgagcgcgaggtcacggtgggctacatgcacatgctgaagctg
aaccacctggtcgacgacaagatgcacgcgcgttcgaccggcccgtactcgctcgtcacc
cagcagccgctgggcggcaaggcgcagttcggcggccagcgtttcggcgaaatggaagtc
tgggcgctggaagcctacggcgcggcctacaccctgcaggaaatgctgacggtgaagtcc
gacgacgtgcagggccgcaaccagatgtacaagaacatcgtcgatggcgagcacgagatg
gtcgcgggcatgccggaatccttcaacgtcctcgtgaaggaaatccgcagcctggccatc
aacatggaactcgaggagcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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