KEGG   Thermococcus sp. 5-4: CDI07_05870
Entry
CDI07_05870       CDS       T05088                                 
Name
(GenBank) DNA repair helicase
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
thh  Thermococcus sp. 5-4
Pathway
thh03022  Basal transcription factors
thh03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:thh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CDI07_05870
  09124 Replication and repair
   03420 Nucleotide excision repair
    CDI07_05870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:thh03021]
    CDI07_05870
   03400 DNA repair and recombination proteins [BR:thh03400]
    CDI07_05870
Enzymes [BR:thh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     CDI07_05870
Transcription machinery [BR:thh03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CDI07_05870
DNA repair and recombination proteins [BR:thh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CDI07_05870
SSDB
Motif
Pfam: HBB Helicase_C_2 DEAD_2 ResIII DEAD SNF2-rel_dom AAA_30 AAA_19 AAA_11 HerA_C
Other DBs
NCBI-ProteinID: ASA77841
UniProt: A0A1Z2TN18
Position
1063893..1065821
AA seq 642 aa
MSETGEGFEYFPYEELRPHQREFIDLVAEAVKNGENAIIEAPTGFGKTVSVLAGILPYAK
EMGYKVLYLARTHRQMDRVIEELKAINRRNPVSGVELRSRKDLCLHTYLTQFTSDAYTAM
VVCKNLKKLKKCEFYENEKKKKTEFDELVKFFLSEPSHPAEILSYAETLELCPYDLTKRI
AEKADVIVASYLYLLSPTIRENFISSLDVDYSDLIVVFDEAHNLPDQAISALSDRISIHT
VNRAIKEADEYNEHEIANFLSIFARGLEILYDEKLKDRDVHETPIQPELVFAHVIDILSL
DTRRLVRILNDMVAVGDAIREDRIEKGKPPRSYIGRVGEFLLFWLSLIGREDYLFLMSRD
RGLSLELVALDPSKALGFIRNVQSAVFMSGTLTPMEAFRDVMGIENVRMKKFPRMVKREN
AQVLVAKDVSTRGDERSLQVYRRMVEYIVEAAKLIPKNVGVFTASYEVLQGLLSANLQVR
LEETGKAIFIEKQGVSSAENDAMVASFKAHAKGRGAVLLGVMGGRNSEGQDYSGDEMNGV
VLVGIPYARPTPRVQAQIRYFERKFPGKGRYYGYYLPAHRKLVQAAGRVHRSAEEKGSII
VLDYRLLWSSIKKDLPDWMRESMRPVDRARMRLYLRRFWGTR
NT seq 1929 nt   +upstreamnt  +downstreamnt
atgagcgaaacgggcgaagggttcgagtactttccctacgaggaactcagaccacatcag
cgggaattcatagacctcgttgcggaggcagttaaaaacggcgagaacgccataatagag
gctcctaccggttttggaaagaccgtgagcgttctggcggggatcctgccttacgccaag
gagatgggctacaaggttctctatctagccagaacccacagacagatggacagggtcata
gaggagctgaaggcgataaacaggagaaacccggtttccggcgttgaactgagaagcagg
aaggacctctgcctgcacacgtacctcacccagttcacgagcgatgcatacaccgccatg
gtcgtctgcaagaacctcaagaagctcaagaagtgcgagttctacgagaacgagaagaag
aaaaagacggaattcgacgagctggtgaagttctttctgagcgagccgagccatccggcc
gagattctgagctacgccgaaaccctggagctgtgcccctacgatttaaccaagaggata
gcggagaaggctgacgtcatagtggccagttacctctacctcctcagccccaccatccgg
gagaacttcataagctccctcgacgttgactactccgacctgatagtcgtcttcgacgag
gcccacaacctgccggaccaggcgatttcggctttaagcgaccggataagtatacacacg
gtaaacagggcgataaaggaggccgacgagtacaacgaacatgagatagccaacttcctc
agcatctttgccagggggctggagatactctacgacgagaagctcaaggacagggacgtg
cacgaaacccccatccagccggagctcgtttttgcacacgtcattgatattctgagcctc
gacaccaggaggctcgttagaatactcaacgacatggtggcggttggcgacgccataagg
gaggacaggatagagaagggcaagccgccccgctcctacatcggccgcgtcggcgagttc
ctcctcttctggctctcgctcattggacgggaggactacctcttcctcatgagcagggac
agggggttgagccttgagctcgtggcgctggatccctcgaaagccctgggcttcatcaga
aacgtccagagcgcggttttcatgtccgggaccctcaccccgatggaggccttccgcgac
gttatgggcatcgaaaacgtccggatgaagaagttcccgaggatggtaaagcgggaaaac
gcgcaggttttagttgccaaagacgtctcgacgagaggcgatgagcgttcgctccaggtt
tacaggcgcatggtggagtacatcgtcgaggcggccaagctcataccgaagaacgtcggg
gtcttcacggcttcctacgaggtccttcaggggcttctctcggcaaacctccaggttcgc
cttgaggagaccggaaaggcgatattcattgagaagcagggcgtcagctcagccgagaac
gatgcgatggtagcgagcttcaaggcccacgccaagggcaggggagcggtgctcctcggg
gtcatggggggcaggaacagtgaggggcaggactacagcggcgacgagatgaacggtgtt
gtgctcgttgggataccctacgcgaggccaactccgagggttcaggcccagataaggtac
ttcgagcgcaagttccctgggaagggccgttactatggctattacctgccggcccacagg
aagctcgtccaggcggctggaagagttcaccgctcggccgaggagaaagggtccataata
gtcctagactaccgcctcctctggagctcgataaagaaggacctgccggactggatgcgc
gagagcatgaggccagttgaccgagcgaggatgaggctgtacctgaggaggttctgggga
acacgctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (22)   

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