KEGG   Thiohalocapsa sp. PB-PSB1: N838_04970
Entry
N838_04970        CDS       T07019                                 
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase subunit omega
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
thip  Thiohalocapsa sp. PB-PSB1
Pathway
thip03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:thip00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    N838_04970 (rpoZ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:thip03021]
    N838_04970 (rpoZ)
   03400 DNA repair and recombination proteins [BR:thip03400]
    N838_04970 (rpoZ)
Enzymes [BR:thip01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     N838_04970 (rpoZ)
Transcription machinery [BR:thip03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     N838_04970 (rpoZ)
DNA repair and recombination proteins [BR:thip03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      N838_04970 (rpoZ)
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: QQO52818
Position
complement(1156618..1156926)
AA seq 102 aa
MARITVEDCLDHVDNRFELVLIGAKRARQLANGVEPLLPWENDKPTVMALREIAGGLIKP
EMLAEADRAAEDAAEALEKALAAEFGMNDLDDDGLKPSANRG
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctcgtatcactgtcgaggattgtcttgatcatgtcgacaaccgcttcgaactcgta
ttgattggggctaaacgcgcacgccagcttgcgaatggcgtcgagccgctattgccttgg
gagaacgataaaccaaccgttatggcattgcgcgagatcgccggtgggctgattaaaccc
gagatgctggcggaggcggatcgagcagccgaagatgctgccgaggcattggagaaggcg
cttgcagccgagtttggtatgaacgatctggatgacgatggccttaagccaagcgcgaat
aggggatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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